PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG114300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 346aa    MW: 38650.2 Da    PI: 9.6399
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG114300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.51.4e-082546425
                         XCHHHCHHHHHHHHHHHHHHHH CS
               bZIP_1  4 lkrerrkqkNReAArrsRqRKk 25
                          k err+++NReAAr+sR+RKk
  Pavir.5NG114300.1.p 25 AKTERRLAQNREAARKSRLRKK 46
                         799******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.7E-62485No hitNo description
PROSITE patternPS0003602944IPR004827Basic-leucine zipper domain
PfamPF141447.4E-28128202IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDILEWRGKQ RKHGTTRKDG KLLDAKTERR LAQNREAARK SRLRKKGGNG QFKKIILAGT  60
MPNNNVRLLQ AYVQQLETSR IRLQQIEQGL CSQGMFPGGG SASGATSSGA VMFDKEYARW  120
LEDDSKLMTE LQGIQQAQNL DADLGAIVEE CVRHYDELFH LRAMLARSDV FHLMTGLWAT  180
TAERCFLWMG GFRPSEILKM LIPQLDPLTE QQLLGMCKCN LQRSSEQTEE ALVQGLQQLH  240
RSLADAVGAS ALIDDGASVG NYTALMALAL DRLDTLESFY RHQTLQQMRR LLTTRQAARC  300
FLSVGEYRRR LRALSSVWAS RPRESFVAAA ENASPTGTPG QAIHP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG114300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680636.10.0transcription factor TGAL5 isoform X4
RefseqXP_022680637.10.0transcription factor TGAL5 isoform X4
SwissprotQ6F2N01e-163TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLK3Z7220.0K3Z722_SETIT; Uncharacterized protein
STRINGSi022106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-94bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]