PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG112800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 559aa MW: 65501.6 Da PI: 8.187

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG112800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.4	2.3e-23	32	128	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn+YA+++GFs+r+++s++sk+ +e tk+ +vC+k g +++ek + +++rr+ ++r++C a++ v+k++ g+wev ++ Pavir.5NG112800.1.p 32 NYYNSYARHTGFSIRIDTSRESKKANEKTKYIYVCQKAGVNKKEKVAddgpitekkIVRQRRKDYVDRMHCPARMIVRKTSPGHWEVVNF 121 69***************************************99999999888999999********************** PP FAR1 82 eleHnHe 88 e eHnHe Pavir.5NG112800.1.p 122 EREHNHE 128 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-21	32	128	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-30	252	346	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MELMFEDGVE VLSTPQEPFV GMSFNTSDAA KNYYNSYARH TGFSIRIDTS RESKKANEKT 60 KYIYVCQKAG VNKKEKVADD GPITEKKIVR QRRKDYVDRM HCPARMIVRK TSPGHWEVVN 120 FEREHNHERL RKFSLTKYMK SHRDIPAEEK EFIKLLHGCC ITTTRAYQIM VELCGGIENC 180 PYTEGDAKNL RVEYRAEYRG KDVKATLEYF EELKKEDPEF YYSYTLDEFD RVENLFWVDG 240 AARRAYELYS DCLSFDTTYL TNAYNMPCAP FKGIDRNGIT IQLGCGFLRN EKTEGFVWLF 300 TKFKKAMDGK DPANIITDQD IAMKAAIGEV FVSSVHRNCR WHIMENARKT MGAFLDSKGD 360 GKQELADDFK DCINNSFTPA EFEQKWQTFL DKYELNNDER FQHLYDMRHC WIPAYFMHCF 420 FPFLQTTARS EGFNAVLKRY VNPKNSILNF VQQYKKIQQR IFSKQDLQEA ATATKVPRYL 480 TGHPMEHQMK KAYTRRLFNV FQHELQLSSS YYVVRVEGDD LIDVVPYRHC PDLLYGTRTF 540 RVTSSRVEGM YSCTCCKF*

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MELMFEDGVE VLSTPQEPFV GMSFNTSDAA KNYYNSYARH TGFSIRIDTS RESKKANEKT  60
KYIYVCQKAG VNKKEKVADD GPITEKKIVR QRRKDYVDRM HCPARMIVRK TSPGHWEVVN  120
FEREHNHERL RKFSLTKYMK SHRDIPAEEK EFIKLLHGCC ITTTRAYQIM VELCGGIENC  180
PYTEGDAKNL RVEYRAEYRG KDVKATLEYF EELKKEDPEF YYSYTLDEFD RVENLFWVDG  240
AARRAYELYS DCLSFDTTYL TNAYNMPCAP FKGIDRNGIT IQLGCGFLRN EKTEGFVWLF  300
TKFKKAMDGK DPANIITDQD IAMKAAIGEV FVSSVHRNCR WHIMENARKT MGAFLDSKGD  360
GKQELADDFK DCINNSFTPA EFEQKWQTFL DKYELNNDER FQHLYDMRHC WIPAYFMHCF  420
FPFLQTTARS EGFNAVLKRY VNPKNSILNF VQQYKKIQQR IFSKQDLQEA ATATKVPRYL  480
TGHPMEHQMK KAYTRRLFNV FQHELQLSSS YYVVRVEGDD LIDVVPYRHC PDLLYGTRTF  540
RVTSSRVEGM YSCTCCKF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG112800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6SLU8	0.0	A0A3L6SLU8_PANMI; Uncharacterized protein
STRING	Pavir.Eb03348.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-88	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5NG112800.1.p