PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG111100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 413aa    MW: 44188.2 Da    PI: 9.151
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG111100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.56.4e-50381632128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ 
  Pavir.5NG111100.1.p  38 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRM 126
                          79***************************.89***************888889************************************* PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + +++++ +glkktLvfy+g+apkg++++W+m+eyrl
  Pavir.5NG111100.1.p 127 IRAENQRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 163
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-5637183IPR003441NAC domain
PROSITE profilePS5100555.42637184IPR003441NAC domain
PfamPF023651.3E-2439163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSGRHEQGHG AMAAAAAGGG GTRAADGGGD AHEDDLVMPG FRFHPTEEEL IEFYLRRKVE  60
GKRFNVELIT FLDLYRYDPW ELPAMAAIGE KEWFFYVPRD RKYRNGDRPN RVTASGYWKA  120
TGADRMIRAE NQRPIGLKKT LVFYSGKAPK GVRSSWIMNE YRLPPDDTDR YQKTEISLCR  180
VYKRTGIDDG HGHPSARSTP SRRAAAAAQQ DIKQASSSST PTPPTTPSKI MHLLHGECTS  240
PPANRDHAAA HNKAAAAAAA QRQLPTKPCN GGYQQLSATR SSAASAGADQ QQVGTAAIPS  300
SSYEQSRNAS AFASTYSLLS LVNAASMGDG SVAAAIDELS TLVGHGPPAH FNHQAGGGGH  360
SHSFLPLPTP SSQPMALGTL PISLAASSDK IWDWNPIPDA AASRDYSSAG FK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-553918419165NO APICAL MERISTEM PROTEIN
1ut4_B9e-553918419165NO APICAL MERISTEM PROTEIN
1ut7_A9e-553918419165NO APICAL MERISTEM PROTEIN
1ut7_B9e-553918419165NO APICAL MERISTEM PROTEIN
3swm_A1e-543918422168NAC domain-containing protein 19
3swm_B1e-543918422168NAC domain-containing protein 19
3swm_C1e-543918422168NAC domain-containing protein 19
3swm_D1e-543918422168NAC domain-containing protein 19
3swp_A1e-543918422168NAC domain-containing protein 19
3swp_B1e-543918422168NAC domain-containing protein 19
3swp_C1e-543918422168NAC domain-containing protein 19
3swp_D1e-543918422168NAC domain-containing protein 19
4dul_A9e-553918419165NAC domain-containing protein 19
4dul_B9e-553918419165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG111100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571310.0EU957131.1 Zea mays clone 1583712 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970843.10.0NAC domain-containing protein 35
TrEMBLA0A2T7DDD80.0A0A2T7DDD8_9POAL; Uncharacterized protein
STRINGPavir.J03312.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-101NAC domain containing protein 35