PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG106900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 297aa    MW: 32722.8 Da    PI: 9.7969
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG106900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-093073446
                         S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46
                         WT+eE +++ +a + l  +  +W+ +ar ++ gRt  ++++++ +
  Pavir.5NG106900.1.p 30 WTAEENKQFERALAGLDLRcpDWEQVARAIP-GRTVREVVHHFKS 73
                         *****************99************.**********986 PP
2Myb_DNA-binding48.12.7e-15144188347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Pavir.5NG106900.1.p 144 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 188
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6872579IPR017884SANT domain
SMARTSM007172.3E-42677IPR001005SANT/Myb domain
SuperFamilySSF466892.87E-83082IPR009057Homeodomain-like
PfamPF002492.0E-63074IPR001005SANT/Myb domain
CDDcd001671.75E-73074No hitNo description
PROSITE profilePS5129418.359137193IPR017930Myb domain
SuperFamilySSF466896.35E-18138193IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-17140191IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-12141187IPR009057Homeodomain-like
SMARTSM007173.4E-13141191IPR001005SANT/Myb domain
PfamPF002491.0E-12144188IPR001005SANT/Myb domain
CDDcd001677.86E-12144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMRETYMEVL PPMDHIASRN GWYHPALRIW TAEENKQFER ALAGLDLRCP DWEQVARAIP  60
GRTVREVVHH FKSLEVDVQQ IENGMVPIPF YGAGAGAGGS FTLQWNGNGG GGPGDFRHGY  120
RFGGGCGKRH PGRTPEQERK KGVPWTEEEH KLFLLGLKKY GKGDWRNISR NFVQTRTPTQ  180
VASHAQKYFI RLNSGGKDKR RSSIHDITTV NLTDDRPPSP SQSSLITNQS NASAPTTAVG  240
HFSLTADAKQ NGAASFPFNS PSRTPVMPTF GMGLQDQGLQ CGPLHDQLVG NPSMLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-132896978RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.97840.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG106900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817822.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H74e-78DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2S3HXR70.0A0A2S3HXR7_9POAL; Uncharacterized protein
TrEMBLA0A3L6SMT60.0A0A3L6SMT6_PANMI; Transcription factor DIVARICATA
STRINGPavir.Eb00572.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-63MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]