PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG092100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 354aa MW: 39686.2 Da PI: 8.5256

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG092100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.6	1e-18	157	236	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF +r +s+k+ rng +t+++ vCs+eg++++++ a+ rtgCka++++ +++d+ w+v+++ HnH+l+ Pavir.5NG092100.1.p 157 EFYNLYSWEIGFGIRYGRSNKN-RNGYTTRQDIVCSCEGFDRQSNA---------ASVRTGCKAMIRLLRTSDHGWYVSRICDVHNHKLS 236 6******************9.8888*********998755.........59*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-15	157	236	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MFDLPYEARC DLTVAAAIRN RFGEDAGVIH PSEGSRTAEY PAQQRNRQEE QWNLTSLPSV 60 EGEEVAVRSD SSQSNATDIN RGSCGASVGC DTTAANPIKL PVRSRRNAAR DGPSARVAYS 120 EESALTAALK RGCKADGTAI FYPYEGTTFN SCEEAREFYN LYSWEIGFGI RYGRSNKNRN 180 GYTTRQDIVC SCEGFDRQSN AASVRTGCKA MIRLLRTSDH GWYVSRICDV HNHKLSEGYV 240 EKKQWNSHNS IDHSMKHYIK KLRENNVSIG RVCSILNSSN SNPSQNLRKE TIRALCAKLS 300 RENMNDDIGK TLKVLDDMKS RDPHMSVRFK LDDGGTVRSM LWCTGKNKDD YSTL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MFDLPYEARC DLTVAAAIRN RFGEDAGVIH PSEGSRTAEY PAQQRNRQEE QWNLTSLPSV  60
EGEEVAVRSD SSQSNATDIN RGSCGASVGC DTTAANPIKL PVRSRRNAAR DGPSARVAYS  120
EESALTAALK RGCKADGTAI FYPYEGTTFN SCEEAREFYN LYSWEIGFGI RYGRSNKNRN  180
GYTTRQDIVC SCEGFDRQSN AASVRTGCKA MIRLLRTSDH GWYVSRICDV HNHKLSEGYV  240
EKKQWNSHNS IDHSMKHYIK KLRENNVSIG RVCSILNSSN SNPSQNLRKE TIRALCAKLS  300
RENMNDDIGK TLKVLDDMKS RDPHMSVRFK LDDGGTVRSM LWCTGKNKDD YSTL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG092100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822596.1	1e-104	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_025822597.1	1e-104	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1B6PK38	7e-93	A0A1B6PK38_SORBI; Uncharacterized protein
STRING	Pavir.J19504.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	4e-16	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Pavir.5NG092100.1.p