PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG084000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 27591.7 Da PI: 10.4028 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.9 | 1.8e-08 | 67 | 110 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +e+ErrRR+riN + +Lr+++P + ++Ka+ L ++v+ +k L Pavir.5NG084000.3.p 67 SEAERRRRERINAHLTTLRRMVPDiR------QMDKATLLARVVDQVKLL 110 699*********************55......799999999999877655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.018 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 66 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-12 | 66 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-6 | 67 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-10 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.32E-7 | 155 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 9.7E-5 | 155 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MAGCQPLQEG KEPQGLQPYD ACDPSVFIGP VLLPRQARSG PPAPPEMSSS SGSGRSATEA 60 RALKIRSEAE RRRRERINAH LTTLRRMVPD IRQMDKATLL ARVVDQVKLL KRKASEATQS 120 MALPPETNEV SIELHTGNNG VVVAGTDKMI YMKASISCDD RPDLIAGLTQ AFHGLRLRTV 180 RADLTSLGGR AQHVFVLCRE EGWGSAGASL RSLKEAVRQA LARVASPEMA YGSSSFQSKR 240 QRILESRCSI MSI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 74 | ERRRRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12447 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG084000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968277.1 | 1e-146 | transcription factor bHLH30 | ||||
Refseq | XP_004968280.1 | 1e-146 | transcription factor bHLH30 | ||||
TrEMBL | A0A3L6QYE8 | 1e-161 | A0A3L6QYE8_PANMI; Transcription factor bHLH30-like | ||||
STRING | Pavir.Eb00492.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 3e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG084000.3.p |