PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG076900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 266aa    MW: 28473.7 Da    PI: 8.2201
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG076900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.5e-151663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l   ++++G  +W++I++  g+ R++k+c++rw +yl
  Pavir.5NG076900.1.p 16 KGLWSPEEDERLTSHIARFGVSCWSSIPELAGLQRCGKSCRLRWMNYL 63
                         678*******************************************97 PP
2Myb_DNA-binding47.54e-1569111145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          rgr++++E++l++ ++k lG+  W+ Ia++++ gR+++++k++w+
  Pavir.5NG076900.1.p  69 RGRFSQQEEDLIIALHKALGNS-WSQIAARLP-GRSDNEIKNFWN 111
                          89******************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-23866IPR009057Homeodomain-like
PROSITE profilePS5129415.9831163IPR017930Myb domain
SuperFamilySSF466891.02E-2714110IPR009057Homeodomain-like
SMARTSM007171.9E-111565IPR001005SANT/Myb domain
PfamPF002495.5E-141663IPR001005SANT/Myb domain
CDDcd001677.61E-111963No hitNo description
PROSITE profilePS5129424.07564118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2567118IPR009057Homeodomain-like
SMARTSM007177.1E-1568116IPR001005SANT/Myb domain
PfamPF002491.5E-1369111IPR001005SANT/Myb domain
CDDcd001679.96E-1171111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRVHPCCSE EKKVRKGLWS PEEDERLTSH IARFGVSCWS SIPELAGLQR CGKSCRLRWM  60
NYLRPDLKRG RFSQQEEDLI IALHKALGNS WSQIAARLPG RSDNEIKNFW NARLRKKLRQ  120
KEASSTAGSK EHAASHRRRR GEDGGSGTHP PAVFNPLPVP EDRPRPAGYV TTPAAAGSSY  180
DNDPSGAGGT AAATCGSVLM AGNAAAAESV APSPTSTTSA CTEAGGCDDG FLKAMVDDAS  240
FLFGDFYLDG NQDGSNSFWG GHAFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RLRKKLR
2113119LRKKLRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG076900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4741392e-40AF474139.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds.
GenBankAP0029122e-40AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10.
GenBankAP0033392e-40AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06.
GenBankAP0149572e-40AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY4593432e-40AY459343.1 Oryza sativa (japonica cultivar-group) clone CL018501.1 R2R3-MYB gene region.
GenBankCP0126092e-40CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817318.11e-162myb-related protein Hv33-like
TrEMBLA0A3L6SVX51e-167A0A3L6SVX5_PANMI; Transcription factor MYB82-like
STRINGPavir.Eb00460.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-61myb domain protein 86