PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG075900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 25844.4 Da PI: 8.0522 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.7 | 2.3e-44 | 30 | 129 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l Pavir.5NG075900.1.p 30 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRL 119 7***************************************************************************************** PP DUF260 91 kaelallkee 100 ++el+++++e Pavir.5NG075900.1.p 120 QKELDAAHAE 129 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.39 | 29 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-43 | 30 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MASPSSTSNN SALSPVAAAS GTTTPGAGAP CAACKFLRRK CLPGCVFAPY FPPEEPQKFA 60 NVHKVFGASN VTKLLNELLP HQREDAVSSL AYEAEARVKD PVYGCVGAIS VLQRQVHRLQ 120 KELDAAHAEL LRYACGDVGI PTALPVSAAP RLSTAMPRPG QFTTSAAAGM YSGRRLGLVD 180 GIAPPPPPAG CYFMRNNNVI SSPGVDVAPG LPYASMANWA VNAMSATTTT TSGSENIGLD 240 HKEGGDSSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-84 | 23 | 149 | 4 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-84 | 23 | 149 | 4 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.16234 | 0.0 | stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG075900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ951639 | 0.0 | JQ951639.1 Loudetia sp. MCE-2012 Ramosa2 (ra2) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818403.1 | 1e-163 | protein LATERAL ORGAN BOUNDARIES-like | ||||
Refseq | XP_025818404.1 | 1e-163 | protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | A0A1E5VHF8 | 1e-163 | A0A1E5VHF8_9POAL; Protein LATERAL ORGAN BOUNDARIES | ||||
STRING | Pavir.Eb00458.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8813 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 8e-63 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG075900.1.p |