PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG052700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 455aa    MW: 48471.1 Da    PI: 6.393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG052700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-12262304855
                          HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           Er+RR+++N++f+ L+ +lP+ a      K +K +iL +A eY++sL+
  Pavir.5NG052700.1.p 262 SERKRREKLNDSFHALKAVLPPgA------KKDKTSILIRAREYLRSLE 304
                          6********************966......99999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15253320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.814254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-12256308No hitNo description
Gene3DG3DSA:4.10.280.103.5E-12258302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9262304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146868.88E-4295323No hitNo description
Gene3DG3DSA:1.20.5.1705.1E-4303322No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDSSCSSWLH GYINNAGNNG FMCGYAAGSC TPAELQYREE EDEEQFLSSS QQIQHHLNQI  60
SMRMNMDDDE ASVYDVPSSD GGGVSPPMGV HNHPIGVDGG HGLLIDPRHA GSFPSSSSSS  120
SPSLPSASLS CSPESSAHVL GTPAAAATTA CSQYLEVSSQ VPMPPAVPYD RHQYANLHVP  180
AAAAMAPEPP ATNTGAFKRY ARHLGPKRPP KPGACGQRMF KTAMSVLSKM HAAARYSAQQ  240
QYYYQQAAAP PPSGNQLQHM FSERKRREKL NDSFHALKAV LPPGAKKDKT SILIRAREYL  300
RSLESKVAEL EEKNRLLESR LARGDDSSDD GSRKDAADSG DEKVQVEITR EANKEVRAAA  360
AGGEPRDDVC TLKIAVSSPC NMTDVAVRTL QCLKEQIGDG VSLVAMSTSG GAEASTTSAR  420
ADLTLQIKSP PGWEEQPVKD AVAKVVADAL TPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262267ERKRRE
2263268RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG052700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817328.10.0putative transcription factor bHLH041
TrEMBLA0A2T7DSE30.0A0A2T7DSE3_9POAL; Uncharacterized protein
STRINGPavir.Ea00369.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.19e-22bHLH family protein