PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG045000.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 256aa MW: 28921.8 Da PI: 9.6727 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.2 | 1.6e-31 | 36 | 85 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Pavir.5NG045000.4.p 36 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 85 79***********************************************8 PP | |||||||
2 | K-box | 102.9 | 4.1e-34 | 104 | 200 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 s++ ++e +a+++qqe+akL++ i++Lq+++R l+G+ ++++sl++L+qLe +Lek++ kiR++Knell++++e++qk+e +lq++n+ Pavir.5NG045000.4.p 104 SNS-GtVAEVNAQHYQQESAKLRQTISSLQNSNRTLVGDAIQTMSLRDLKQLEGRLEKGIAKIRARKNELLYAEVEYMQKREMDLQSDNM 192 233.25999********************************************************************************* PP K-box 93 aLrkklee 100 +Lr+k++e Pavir.5NG045000.4.p 193 YLRSKVAE 200 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.221 | 28 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-41 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-33 | 29 | 100 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.50E-47 | 29 | 102 | No hit | No description |
PRINTS | PR00404 | 4.9E-33 | 30 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 30 | 84 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.7E-27 | 37 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-33 | 50 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-33 | 65 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-25 | 113 | 198 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.195 | 114 | 204 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLNMMADLSC GSSKVKEQQA PTGSGDKPGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY 60 ELSVLCDAEV ALIVFSSRGR LYEYANNSVK ATIERYKKAN SDTSNSGTVA EVNAQHYQQE 120 SAKLRQTISS LQNSNRTLVG DAIQTMSLRD LKQLEGRLEK GIAKIRARKN ELLYAEVEYM 180 QKREMDLQSD NMYLRSKVAE NNERGQLPMN MMGAPSTSEY DHMAPYDSRN FLQVNIMQQP 240 QHYSHQLQPT TLQLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 5e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_B | 5e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_I | 5e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_J | 5e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_A | 5e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_B | 5e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_C | 5e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_D | 5e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_I | 5e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_J | 5e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4354 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at early stage of flower development in stamen anlagen before stamen initiation, and at later stage in lodicule and ovule primordia initiation region. {ECO:0000269|PubMed:10945340, ECO:0000269|PubMed:16326928}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lemmas, paleas and lodicules. {ECO:0000269|PubMed:10945340}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG045000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960810 | 0.0 | EU960810.1 Zea mays clone 228787 MADS-box transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816639.1 | 0.0 | MADS-box transcription factor 3 isoform X2 | ||||
Swissprot | Q40704 | 1e-151 | MADS3_ORYSJ; MADS-box transcription factor 3 | ||||
TrEMBL | A0A3L6R3C7 | 0.0 | A0A3L6R3C7_PANMI; MADS-box transcription factor 3 isoform X1 | ||||
STRING | Pavir.Ea00226.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-105 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG045000.4.p |
Publications ? help Back to Top | |||
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