PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG035200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 847aa    MW: 94553.8 Da    PI: 8.9549
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG035200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-094686345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         +W+++E  ++++a +++G++ Wk+I++ +  g++  +++s + 
  Pavir.5NG035200.1.p 46 KWSKDELTQFYEAYRRHGKD-WKKISSAVR-GKSSDMVRSLYS 86
                         8*****************99.*********.*******99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.26E-104089IPR009057Homeodomain-like
PROSITE profilePS5129311.4964299IPR017884SANT domain
SMARTSM007173.5E-44391IPR001005SANT/Myb domain
CDDcd001676.10E-64683No hitNo description
Gene3DG3DSA:1.10.10.602.3E-44685IPR009057Homeodomain-like
PfamPF002491.9E-84685IPR001005SANT/Myb domain
PfamPF065842.3E-31477577IPR033471DIRP domain
SMARTSM011351.9E-38477578IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MAPAKGSRTI NKTIIKGYED QRQYDDPPSS SKAKQKKRKI SDLNPKWSKD ELTQFYEAYR  60
RHGKDWKKIS SAVRGKSSDM VRSLYSVHRT FLSLPERQAT AIGFIALVTG HHNASEKSTS  120
HIGDDRMIRA SGKARHRGEA IQQKATERPD LHDHHEGTIA GFSSSFKKRY YGDLVRNIRN  180
HAVRRRTPRI PVIAPAVKNT IDEASPDRSS RITETNKAGQ DHIFLDTKAT GDSAICQQQL  240
KKTRIQQPTQ QGQTIKVEHE TVMASDDGNK LVDSLNQHHI ERNIISEDDM LVLDVLNSLV  300
NAPSKTSKLE IKVPSGSHGK TDSVLSDRRE KGQPTIDLSK LGKAIGKSSA SKTGKKRHKK  360
LLDAEVPAEA QNISVNNLVL PEAPKVGITD DSSLWCTDSA RVGIPEASED ISTKAPSAAT  420
EIKPEIRMSR RTRRKYQMQC KTKHVSCNED SDNLQAKKLL HCLSSESLRR WCTYEWFYSA  480
VDYPWFSDNE FVHYLNHAKL SHLSRLTRSE WSAIRSSLGK PRRFSDHFLA VEKEKLEDYR  540
EKVRKIYAQL RDGSRDSLPA DLARPFSIGQ EVIVRHPSSR ELCDGKVVMM GPDCYKVHFV  600
NPDLGVDIVK DTDCMPVNWL YNHPDNMRRS CLSNNVYSIM EAEHIPDLAP SENWDLAVHG  660
VTVTSDKQLK VESGVNGERP PYWSTSNGRP TKSGGCPDDD AGHDDELESS ILAFVQKSLS  720
QARQMVDEAM KANSEGSDVR VRMPNQETDC VGPQYEAAIR GAQLPSNLIA NCIATILSIK  780
RLSDSRHPFA SIAGVLEHAS SMLRPSCPEN LAIYKDIETY ISVIANQILA LVPTALGNCG  840
PPMSPM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.157330.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG035200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816481.10.0protein ALWAYS EARLY 3-like
TrEMBLA0A2S3HZA00.0A0A2S3HZA0_9POAL; Uncharacterized protein
STRINGPavir.J02622.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.27e-63DNA binding