PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG034300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 27225.7 Da PI: 7.8016 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde l +v ++G+g +W + +++ g++R++k+c++rw++yl Pavir.5NG034300.1.p 14 RGPWSPEEDEALRSYVLRHGSGgNWISMPKKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.5e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ + qlG++ W++Ia+ + gRt++++k++w++ Pavir.5NG034300.1.p 69 GGFTDEEDAVIISLYSQLGSK-WSLIASQLE-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.171 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.72E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.48E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.373 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.62E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRTPCCDRA AVKRGPWSPE EDEALRSYVL RHGSGGNWIS MPKKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTDEEDAVII SLYSQLGSKW SLIASQLEGR TDNDVKNYWN TKLKRRLLAA 120 AATAGIVSTR SPPSVPRLPA ATASAPPAAA TVTTHAPSLF PLLAIPTVKT EMYTCDDFLA 180 PAAFRDDPFA AADGSTSASA ASSASNWSAD NGAVGGGEGS FLLDFCAGSG LGAADDHLQL 240 PGGYYYYPLD PNLSLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG034300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679416 | 1e-161 | HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817369.1 | 1e-153 | transcription factor RAX1-like | ||||
Refseq | XP_025817370.1 | 1e-153 | transcription factor RAX1-like | ||||
TrEMBL | A0A3L6SQD0 | 1e-153 | A0A3L6SQD0_PANMI; Transcription factor RAX2-like | ||||
STRING | Pavir.Eb00254.1.p | 1e-175 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 4e-61 | myb domain protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG034300.1.p |