PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG009300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 313aa    MW: 33757.9 Da    PI: 5.6346
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG009300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.6e-51201491128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrF+Ptd+e++v+yLkkk+++    ++++i++vdiyk++Pw+Lp  ++  ++ ew+fFs+rd+ky++g r+nr++ sgyWkatg+d
  Pavir.5NG009300.1.p  20 LPPGFRFQPTDQEIIVYYLKKKIAAAAAAVTSIIADVDIYKFDPWELPaDNAVFGDGEWFFFSPRDRKYPNGARPNRTAGSGYWKATGTD 109
                          79*************************999999***************545556889********************************* PP

                  NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k++l+  + +  g+kk Lvfy+gr+pkg kt+Wvmheyrl
  Pavir.5NG009300.1.p 110 KPILAPgGAHCLGVKKALVFYQGRSPKGAKTEWVMHEYRL 149
                          *****9555669**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-5912180IPR003441NAC domain
PROSITE profilePS5100560.28720180IPR003441NAC domain
PfamPF023651.4E-2621149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEEEEEAAAA SSLVFRGCPL PPGFRFQPTD QEIIVYYLKK KIAAAAAAVT SIIADVDIYK  60
FDPWELPADN AVFGDGEWFF FSPRDRKYPN GARPNRTAGS GYWKATGTDK PILAPGGAHC  120
LGVKKALVFY QGRSPKGAKT EWVMHEYRLL DTDAARLNTC RPTTNSMRLD DWVLCRVRNK  180
HHHDWAVVVH NSSSSPSEPT TRRDVVLPPP PPAGSAYDAD IDGQLLHYLI AAGGGSDGGA  240
SPPDPGASAA AVAGGGDSAT LVTVLDSIKR NLSFQAIDEL YLLQPSSKRA NCMMMVRGAD  300
DEPASSDDQV FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-622018117166NO APICAL MERISTEM PROTEIN
1ut4_B5e-622018117166NO APICAL MERISTEM PROTEIN
1ut7_A5e-622018117166NO APICAL MERISTEM PROTEIN
1ut7_B5e-622018117166NO APICAL MERISTEM PROTEIN
3swm_A5e-622018120169NAC domain-containing protein 19
3swm_B5e-622018120169NAC domain-containing protein 19
3swm_C5e-622018120169NAC domain-containing protein 19
3swm_D5e-622018120169NAC domain-containing protein 19
3swp_A5e-622018120169NAC domain-containing protein 19
3swp_B5e-622018120169NAC domain-containing protein 19
3swp_C5e-622018120169NAC domain-containing protein 19
3swp_D5e-622018120169NAC domain-containing protein 19
4dul_A5e-622018117166NAC domain-containing protein 19
4dul_B5e-622018117166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG009300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815776.11e-141NAC transcription factor 32-like
SwissprotD2SMN42e-70NAMB1_HORVS; NAC transcription factor NAM-B1
TrEMBLA0A2T7DTI61e-145A0A2T7DTI6_9POAL; Uncharacterized protein
STRINGPavir.Ea00010.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137971929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-57NAC family protein
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]