PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG006800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 621aa MW: 67524.4 Da PI: 8.0019 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 466 | 512 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Pavir.5NG006800.1.p 466 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 512 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.0E-50 | 60 | 245 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.831 | 462 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.81E-19 | 465 | 529 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.83E-15 | 465 | 516 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-18 | 466 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-10 | 466 | 512 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-16 | 468 | 517 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MVMKMEMEDD GAVGGTGGTW TEEDRALGAA VLGTDAFAYL TKGGGAISKG LVAASLPDDL 60 QNKLQELVES DGPGTGWNYA IFWQLSRTKS SDLVLGWGDG SCREPRDGEV GAAASAGSDD 120 TKQRMRKRVL QRLHMAFGVA DEEDYAPGID QVTDTEMFFL ASMYFAFPRR AGGPGQVFAA 180 GIPLWIPNNE RKVFPANYCY RGFLANAAGF RTIVLVPFES GVLELGSMQH VAESSDTIQT 240 IRSVFTGASG NKAAVQRHEG NGPTPPERSP ALAKIFGKDL NLGRPSAVPA VGVSKIDERS 300 WEQRAAAGGG TSLLPNVQKG LQNFTWSQAR GLNSHQQKFG NGVLIVSNEA AHRSNGAADS 360 PSATQFQLQK APQLQKLQLQ KLPHIQKTPQ LVNQQPLQPQ VPRQIDFSAG SSSKSGVLVT 420 RAAVLDGESA EMDGLCKEEG PPPVIEDRRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ 480 RFYALRAVVP NISKMDKASL LGDAITYITD LQKKLKDMET ERERLLESGM VDPRERAPRP 540 EVDIQVVQDE VLVRVMSPME SHPVKKVFQA FEEAEVRVGE SKVTGNNNGT VVHSFIIKCP 600 GTEQQTREKV IAAMSRAMSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-28 | 460 | 522 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 6e-28 | 460 | 522 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 6e-28 | 460 | 522 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 6e-28 | 460 | 522 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 6e-28 | 460 | 522 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 6e-28 | 460 | 522 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 6e-28 | 460 | 522 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 6e-28 | 460 | 522 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 447 | 455 | RRPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.20750 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG006800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816895.1 | 0.0 | transcription factor bHLH13-like | ||||
TrEMBL | A0A3L6SNM9 | 0.0 | A0A3L6SNM9_PANMI; Transcription factor bHLH13-like | ||||
STRING | Pavir.Eb00041.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5174 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 2e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG006800.1.p |