PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG757600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 814aa    MW: 92652.4 Da    PI: 7.434
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG757600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.35.7e-14121231276
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................................tekerrt 54 
                          fYn+YA+++GFsvr+ +s+ s   +e +k  fvC+keg+ ++ k++                                     + ++r++
  Pavir.5KG757600.1.p 121 FYNSYARRIGFSVRTGTSRLSGPAREQKKVLFVCNKEGHGRKGKEEvppaesddsnyeigesetennnegkgnadidkkkqldSGRKRKR 210
                          9********************999999***************9999***********************************998999999 PP

                 FAR1  55 raetrtgCkaklkvkkekdgkw 76 
                          ++  +t+Cka+++vk+   ++w
  Pavir.5KG757600.1.p 211 EKMLHTDCKARMVVKMI-GDRW 231
                          999************99.6666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-12121232IPR004330FAR1 DNA binding domain
PfamPF105515.4E-12349395IPR018289MULE transposase domain
PROSITE profilePS509669.137615651IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-4617648IPR007527Zinc finger, SWIM-type
SMARTSM005750.0053626653IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MDLNELPPDF DYDFLDESEA NPSYCTQIVP CGGAKTVHDT EHAAVSNNEG PNGDGIGAIG  60
NNIAEDAPTM DVSNDEDPNG DDIGAVGNNI TEDAPTMDIW STLPVPYTGQ TFGTKQEARA  120
FYNSYARRIG FSVRTGTSRL SGPAREQKKV LFVCNKEGHG RKGKEEVPPA ESDDSNYEIG  180
ESETENNNEG KGNADIDKKK QLDSGRKRKR EKMLHTDCKA RMVVKMIGDR WHKFMRSHKG  240
ISREKKEFIA LLHGCNLSTG RIMQLMNEFY GSAQLVPYEG KDVGNFHSTI RRTGKYQDIQ  300
QTLDYFKELE QEDPEFFYKI KLDGEHRVES LFWVDGAAKH AYIESYHDCV SFDATYMTNM  360
YDMPFTPFIG INRHEQSFLL GCAFLRDEKT PSYTYTITDQ DAAMRSAIAK TFSNTNHRNC  420
RWHIMDKFSG TIGPVLAANT ELEDDFKECL NHTVNPAELE AKWAAMIDKY VLHDDVHFQH  480
LYTIRSSFVP AFYMHCFYPF LQSTQRSEGF NSVLKRYVNP NMSVLHFVRQ YQKIQDKCLV  540
AQDWQDFMTD DRDRRRWSKY PIEKHASTVY IKNLFYRFSK EFEKTVKYDV RSGSEFQYYL  600
VPNNKFVYGH GKRTYLVTAI EGEGSYYCEC SKYDRDGIIC CHIMKIMTRL GVKAIPDRYI  660
LKRWTQETCD ATETADPSAH VEANYIARGM PLSNRKTLWF TNLPTAFAGL AAEGCVSRET  720
YTLVDTHIKE MRSALDEIKR RKRPKVGDGG GSPSIPTAVA MSDPVGNPPR SKVKGRKEKR  780
LKKGMNEEAK KNKCGICKSS GHNAAMCAKK NVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205211RKRKREK
2205212RKRKREKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG757600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5R8G40.0A0A1Z5R8G4_SORBI; Uncharacterized protein
STRINGPavir.Ea04012.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-81FAR1-related sequence 5