PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG746500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 301aa    MW: 32187.2 Da    PI: 8.9301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG746500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.62.8e-222699171
             trihelix  1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
                         rWt++e+l+Li+arr me+r  +     +  p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k 
  Pavir.5KG746500.1.p 26 RWTRHETLVLIQARRAMERRGLAlpvPVRPWPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKA 99
                         8*******************99833335889****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8641986IPR017877Myb-like domain
PfamPF138374.7E-92697No hitNo description
Gene3DG3DSA:1.10.10.606.5E-42685IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMSANENSPP VEAAAAASTP RSRLPRWTRH ETLVLIQARR AMERRGLALP VPVRPWPKWA  60
AVSAYCRRHG VERGPMQCRK RWGNLSWDLK KIVAWEGKAA GAGAAPPQLH ESFWDMRGDQ  120
RRARQLPSSF DREVYDALVC GTSAAAGEDA AAPPGFGDGE LDGVYRQPPI MVMPISARKY  180
EPPPASSEHE CSGPVTESDK KAGAAASDKN STSQHDGGGF KDSDATFVAE AEGATTATPA  240
AATASIGKQV IEALERGNRA LAQQLEAQTS SWRADREQRA ALLGALDRLA GAVARIADKL  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG746500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280310.0KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819294.10.0trihelix transcription factor ASR3-like
TrEMBLA0A3L6PT150.0A0A3L6PT15_PANMI; Trihelix transcription factor ASR3-like
STRINGPavir.Ea03865.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-36Trihelix family protein