PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG744500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 27359.5 Da PI: 8.1715 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.7 | 6.9e-34 | 22 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pk...kvkaeekewyfFskrdkkya.tgkrknratksgyWk 84 lp GfrF+Ptd+el+ +yL++k+ + +l++ +i+++d+ +++PwdL p ++ + e +fF++ +++ +g + ra+ +g+W+ Pavir.5KG744500.2.p 22 LPIGFRFRPTDDELLLHYLRRKALACPLPA-GIISDADLARLHPWDLlpPVpggGAADADGERFFFHRPATRCWrKGGGAARAAGAGVWR 110 699***************************.99**************64235553334555888888877666527999*********** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gk+k v+s ++ vg+k+tLvf +gra+ + +tdW mheyrl Pavir.5KG744500.2.p 111 PSGKEKLVVSPrCKRPVGTKRTLVFCRGRARGAARTDWAMHEYRL 155 *********9877889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-44 | 15 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.858 | 22 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-20 | 23 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEGRPGGAWR VQGPAGAPVA GLPIGFRFRP TDDELLLHYL RRKALACPLP AGIISDADLA 60 RLHPWDLLPP VPGGGAADAD GERFFFHRPA TRCWRKGGGA ARAAGAGVWR PSGKEKLVVS 120 PRCKRPVGTK RTLVFCRGRA RGAARTDWAM HEYRLLPAGL HPFHGCAASG SPTAAHVSCN 180 GAAADWVVCR IFKRTKPAVH RGRDDDDVDA EERPSSPSSA SSCVTDTSET GDQEHDDDEE 240 SSSSSSNGEG SSCSVASN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-27 | 21 | 194 | 14 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4398 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG744500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969970 | 1e-133 | EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817662.1 | 1e-138 | NAC domain-containing protein 83-like isoform X1 | ||||
TrEMBL | A0A2T7DC99 | 1e-139 | A0A2T7DC99_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03888.1.p | 1e-145 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 6e-30 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG744500.2.p |