PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG733400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 671aa    MW: 74454.6 Da    PI: 5.3696
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG733400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-1390177197
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkv+    +++++ + +p +fa+++ ++   +   + led  g +W+v+l  + ++g   ++ GWk+Fv ++ +  g+f+vF+ + rs 
  Pavir.5KG733400.1.p  90 FFKVM--MGYFSEH-MDIPPPFARTIlDLA--G-SNIYLEDAFGLRWRVRL--CLRDGVLSFGHGWKNFVLDHAISCGEFLVFRQIARSV 171
                          77888..6667777.9**********6333..3.37***************..88999999***********************988888 PP

                          E..EEEEE CS
                   B3  90 felvvkvf 97 
                          f  +v++f
  Pavir.5KG733400.1.p 172 F--TVQMF 177
                          8..77766 PP
2B332.51.6e-106016652995
                          -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          kk++ k ++l+d+  r W v +  + +++   + +GW + +++n+L+egD++ F+l+g+se ++ v+
  Pavir.5KG733400.1.p 601 KKQGRKVVILKDPCTRLWPVLY--QCTPRFSGFITGWVDICRENNLQEGDTCEFELSGNSELSFQVR 665
                          455667899*************..55665555667**********************9998876666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2187180IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.61987180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-1987180IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-1788177No hitNo description
SMARTSM010192.4E-1390180IPR003340B3 DNA binding domain
PfamPF023629.6E-1190177IPR003340B3 DNA binding domain
PROSITE profilePS5086310.503573668IPR003340B3 DNA binding domain
SMARTSM010190.0029576668IPR003340B3 DNA binding domain
CDDcd100172.14E-11587665No hitNo description
SuperFamilySSF1019361.57E-14588668IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-12601666IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-8601665IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MVKLIEGGAV KKEPEETVVE IDSKREEAEK EVVKRRRRRR KKKKKAFDPH QNRACVDCQK  60
RCARIHGRAA SSSPSPSSSK TRPIPAVPSF FKVMMGYFSE HMDIPPPFAR TILDLAGSNI  120
YLEDAFGLRW RVRLCLRDGV LSFGHGWKNF VLDHAISCGE FLVFRQIARS VFTVQMFAPS  180
AVERLFLCET NKRQSRKRKP RQKTICPSSQ TVKISKNCKK KQRTDHHNNL GPKDCQMPDH  240
VFIDDSDFPH SASELKCSEA SGGVPEVRVT EPQEDSEAPT TTTTRHDCKA QEVLDGEAEI  300
ADDCTVFEEK ESECNERAMQ HLVSDATEIE NVDGLNLPTN TDAIGPLAMM DLNEVNIDDI  360
FLSADIYEFE NDICTPEAFS VDLNMGGPIT IAQNSGFSCL EDTQQNHFSS TGDDQRFVMP  420
ETLSCTENKE MTDAVVTGSV CTDACVAVHD IDINALPANE PSSFAKENSS PPADPEVHSS  480
ECVLSGCKKD TDLLSCKDSQ AEHKEVKHDK QQDGQGNKQD STGQNSAEVI SSSTKLHEHP  540
HLCQNLHQTE NNSEGIGSGT SESGGVLALS ASTSKFCIAV PEPEQTWLEL PTRLPVIPRT  600
KKQGRKVVIL KDPCTRLWPV LYQCTPRFSG FITGWVDICR ENNLQEGDTC EFELSGNSEL  660
SFQVRVPSLQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338KRRRRR
23439RRRRRR
33644RRRRKKKKK
43844RRKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.163740.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG733400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815832.10.0B3 domain-containing protein Os01g0905400-like
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A3L6RFD70.0A0A3L6RFD7_PANMI; B3 domain-containing protein
STRINGPavir.Ea03523.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-09B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]