PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG731100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 354aa    MW: 37665.9 Da    PI: 7.5538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG731100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12287331654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +++Er RR ri +++ +L++l+P+     +k  + +++L +AveYIk+L
  Pavir.5KG731100.1.p 287 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDLAVEYIKEL 331
                          689*********************7....688***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.697281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-15284341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-12285336No hitNo description
Gene3DG3DSA:4.10.280.102.0E-15286343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-10287331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNRLTPAHHQ GPMPPPGTGQ LARYGSAPGS LLAAIAESVT RGGDHAPPPP FSRFYSAESS  60
GLTSCESSCR TDGGSARPRA LERAYGGSGE IRVPPPQQQS LAPPGPPHGL LRHSSSPAGL  120
LSRLTADPHG MAPASGMGSY SQAGTDAAMA HGHRQLSSQW SFSRQDLPQI SEMEVIPDVG  180
ESIVAGGCNS SSDGGAAAAQ SSSYLSRNFS VSSWDDANSI MFSPPNKKPK LDAADDMVTS  240
FSNIDSQFGL SKSSLEMPGM DDYLQPQQDS VACRVRAKRG CATHPRSIAE RERRTRISKR  300
LKKLQDLVPN MDKQTNTSDM LDLAVEYIKE LKGQVEKLKH DQENCFCSGN QNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.94340.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG731100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814593.10.0transcription factor bHLH128-like
TrEMBLA0A2S3HP780.0A0A2S3HP78_9POAL; Uncharacterized protein
STRINGPavir.J01306.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-58bHLH family protein