PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG712800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 485aa MW: 50844.8 Da PI: 6.3922 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.6e-09 | 289 | 336 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Pavir.5KG712800.1.p 289 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 336 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.30E-10 | 283 | 340 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-16 | 283 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.256 | 285 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 287 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 289 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 291 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MNCGPPDQLP PASAPSCFLN LNWDQSMAAA AAGDHLDPAL SSMVSSPASN STAAAAIDGL 60 ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYQPPQVGG AGPGGLPILE NLMPMGHLDQ 120 FLADPGFAER AARLSGFDGR PGGSDYGGAV PGQFGLPDAG PVGALKELEL GNGRDESSVS 180 DPASASAEMA LKGPSDGNAK KRKASGKGKG KDGPGSTAAK DPAKEESSGK RCKSADESNG 240 AEDNSGKGKA AQSNSENGGK KQGKDTSKPP EPPKDYIHVR ARRGEATDSH SLAERVRREK 300 ISQRMKLLQD LVPGCNKVVG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PQLDFNNLPN 360 LLPKDIHQSC GPMQSSHFPL ETSGAPLPYL NQSHQGSPLG CSLTNGMDNQ SNMHPLDPAF 420 CRQMNSQHPF LNGVSDAASQ VGTFWQDDLQ SVVHMDIGQG QEIAATSSNS YNGSLQTVHM 480 KMEL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2042 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG712800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971039.1 | 0.0 | transcription factor bHLH77 | ||||
TrEMBL | A0A2T7DCJ5 | 0.0 | A0A2T7DCJ5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03809.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-66 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG712800.1.p |