PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG699600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 28804.3 Da PI: 7.8555 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.7e-12 | 195 | 239 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er RR ri +++ +L++l+P+ +k + +++L +AveYIk+L Pavir.5KG699600.2.p 195 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDLAVEYIKEL 239 689*********************7....688***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.697 | 189 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-15 | 192 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.52E-13 | 193 | 244 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-15 | 194 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-13 | 195 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-10 | 195 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSCWLSTHAW IAGSWSDRRT QRFPHAELML FPFLMHAGMA PASGMGSYSQ AGTDAAMAHG 60 HRQLSSQWSF SRQDLPRISE MGMIPADIGE SIVAGGGCNS SSDGAAQSSS YLSRNFSVSS 120 WDDTNSIMFS SSPNKKPKLD AADDMVTSFS NIDSQFGLSK SSLEMPGMDD YLQLQQDSVA 180 CRVRAKRGCA THPRSIAERE RRTRISKRLK KLQDLVPNMD KQTNTSDMLD LAVEYIKELK 240 GQVEKLKHDQ ANCFCSGNQN S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9434 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG699600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970333 | 0.0 | EU970333.1 Zea mays clone 343433 mRNA sequence. | |||
GenBank | EU972851 | 0.0 | EU972851.1 Zea mays clone 389073 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814593.1 | 1e-149 | transcription factor bHLH128-like | ||||
Swissprot | Q8H102 | 1e-48 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A2S3HP78 | 1e-147 | A0A2S3HP78_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J01306.1.p | 1e-147 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 3e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG699600.2.p |
Publications ? help Back to Top | |||
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