PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG665900.7.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 462aa    MW: 51079.2 Da    PI: 4.3626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG665900.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.41.4e-4961331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtd el ++yLk+k+ gkkl + e+i+ev++yk+ PwdLp k ++++++ ewyfF++rdkkya+g+r+nr+t  g+Wk+tgk
  Pavir.5KG665900.7.p   6 LPPGFRFHPTDLELCSYYLKRKIMGKKLLV-EAISEVELYKYAPWDLPdKsCLQSRDMEWYFFCPRDKKYANGSRTNRSTPFGFWKSTGK 94 
                          79*************************999.89**************96358888999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++  +++ vg+kktL+f++g+ap+g +tdWvm eyr+
  Pavir.5KG665900.7.p  95 DRTIVL-NTRIVGMKKTLIFHEGKAPRGDRTDWVMYEYRM 133
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-593156IPR003441NAC domain
PROSITE profilePS5100557.0286156IPR003441NAC domain
PfamPF023654.1E-257133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDLELC SYYLKRKIMG KKLLVEAISE VELYKYAPWD LPDKSCLQSR  60
DMEWYFFCPR DKKYANGSRT NRSTPFGFWK STGKDRTIVL NTRIVGMKKT LIFHEGKAPR  120
GDRTDWVMYE YRMEDSELDV AGFSKDEYVL CKIFKKSGLG PKPGEQYGAS FNEGEWDNVN  180
TEAVFSLMPC LSSEVVGAVN KPPCQHTVAS TSSVIKEPHV LAVASADGLP FEFSTSSITA  240
IDEVHADTLR HNGSEMVTAN RASDTLYAYD PTEFGVISLE EIDKWASCND SADNDGGASE  300
MLAGLPDISE AEAQALEMNS DYCCNELARL VKSGVSTANS LSPSYVNTEC LNPPMISGLG  360
VVDDYLEISD IFPPGETASF KLPAPESQFC QYPLEFEQCP HNELNHPQYD NEGALAAPSE  420
ACDLLPAISC SMHDISADDN TCSANLMWRD CSNSTVWYPF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-50215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.61740.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG665900.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0535681e-134HM053568.1 Setaria italica NAC transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814465.10.0NAC domain-containing protein 68-like
RefseqXP_025814466.10.0NAC domain-containing protein 68-like
RefseqXP_025814467.10.0NAC domain-containing protein 68-like
RefseqXP_025814468.10.0NAC domain-containing protein 68-like
TrEMBLA0A3L6SJK20.0A0A3L6SJK2_PANMI; NAC domain-containing protein 82
STRINGPavir.J18990.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.15e-79NAC domain containing protein 103