PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG665900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 462aa MW: 51079.2 Da PI: 4.3626 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.4 | 1.4e-49 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtd el ++yLk+k+ gkkl + e+i+ev++yk+ PwdLp k ++++++ ewyfF++rdkkya+g+r+nr+t g+Wk+tgk Pavir.5KG665900.3.p 6 LPPGFRFHPTDLELCSYYLKRKIMGKKLLV-EAISEVELYKYAPWDLPdKsCLQSRDMEWYFFCPRDKKYANGSRTNRSTPFGFWKSTGK 94 79*************************999.89**************96358888999******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++ +++ vg+kktL+f++g+ap+g +tdWvm eyr+ Pavir.5KG665900.3.p 95 DRTIVL-NTRIVGMKKTLIFHEGKAPRGDRTDWVMYEYRM 133 ******.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-59 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.028 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-25 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MAQTSLPPGF RFHPTDLELC SYYLKRKIMG KKLLVEAISE VELYKYAPWD LPDKSCLQSR 60 DMEWYFFCPR DKKYANGSRT NRSTPFGFWK STGKDRTIVL NTRIVGMKKT LIFHEGKAPR 120 GDRTDWVMYE YRMEDSELDV AGFSKDEYVL CKIFKKSGLG PKPGEQYGAS FNEGEWDNVN 180 TEAVFSLMPC LSSEVVGAVN KPPCQHTVAS TSSVIKEPHV LAVASADGLP FEFSTSSITA 240 IDEVHADTLR HNGSEMVTAN RASDTLYAYD PTEFGVISLE EIDKWASCND SADNDGGASE 300 MLAGLPDISE AEAQALEMNS DYCCNELARL VKSGVSTANS LSPSYVNTEC LNPPMISGLG 360 VVDDYLEISD IFPPGETASF KLPAPESQFC QYPLEFEQCP HNELNHPQYD NEGALAAPSE 420 ACDLLPAISC SMHDISADDN TCSANLMWRD CSNSTVWYPF S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-50 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6174 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG665900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM053568 | 1e-134 | HM053568.1 Setaria italica NAC transcription factor gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814465.1 | 0.0 | NAC domain-containing protein 68-like | ||||
Refseq | XP_025814466.1 | 0.0 | NAC domain-containing protein 68-like | ||||
Refseq | XP_025814467.1 | 0.0 | NAC domain-containing protein 68-like | ||||
Refseq | XP_025814468.1 | 0.0 | NAC domain-containing protein 68-like | ||||
TrEMBL | A0A3L6SJK2 | 0.0 | A0A3L6SJK2_PANMI; NAC domain-containing protein 82 | ||||
STRING | Pavir.J18990.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 5e-79 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG665900.3.p |