PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG654700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 532aa    MW: 57960.2 Da    PI: 6.7937
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG654700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.98.1e-12221250433
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                           k err+++NReAAr+sR+RKka++++Le+
  Pavir.5KG654700.1.p 221 AKTERRLAQNREAARKSRLRKKAYVQQLET 250
                          799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.6E-8218294IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-7220264No hitNo description
PROSITE profilePS502179.151220264IPR004827Basic-leucine zipper domain
PfamPF001702.4E-8221255IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.69E-7222265No hitNo description
PROSITE patternPS000360225240IPR004827Basic-leucine zipper domain
PfamPF141442.5E-28303377IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MVHGEESSWR MERAALPLNP ALAYGVQPHA AAAAPPPSCF LEFQPAAAAA AYFGFGELEE  60
ALIHGGGGAS ASTGGCGIDP GVITRSDVAA QTKPAGYLAG AGRPPTLEIF PSWPMRHQQQ  120
LHSGNSQSVG STTDSSSAQN TMSQMELVSP ASPAAPRQEV MMVTTDDYSY KPGGLAAAAP  180
SFQQQHHHQQ PPPPLQLHGG GDHDKRKQAG STRKDGKLVD AKTERRLAQN REAARKSRLR  240
KKAYVQQLET SRIRLQQVEH DLQRARSQGL FVGGCSAAGD MSSGAAMFDM EYARWLDDDS  300
KRLAELRGGL QAHLLDGNLG LIVEECLQHY DELFQLKAVL ARADVFHLLT GGWATPAERC  360
FFWMGGFRPS ELLKILIPQL DPLTEQQLLG ICNLQQSSEQ AEEALAQGLH QLHQSLADTV  420
AAGTLNDGAA APDYMSLMAV ALDKLASLES FYQQADNLRQ QTLHQMRRIL TTRQAARCFL  480
SIGEYYRRLR ALSNLWASRP RDNFIGTENL SPTATELQVM HQQQQNQFSG F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.58390.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269|PubMed:9490265}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG654700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0369490.0AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001104893.10.0transcription factor LG2
SwissprotO490670.0LG2_MAIZE; Transcription factor LG2
TrEMBLA0A1R3PT620.0A0A1R3PT62_MAIZE; Basic leucine zipper protein
STRINGPavir.Ea03760.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-140bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]