PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG647100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 192aa    MW: 21495.9 Da    PI: 9.986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG647100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.6e-14124168347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++eE+ l++++ +++G g+W+ I+r    +Rt+ q+ s+ qky
  Pavir.5KG647100.1.p 124 PWSEEEHRLFLRGLQEYGRGDWRNISRFAVRTRTPTQVASHAQKY 168
                          7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4931670IPR017877Myb-like domain
SMARTSM007170.0852072IPR001005SANT/Myb domain
SuperFamilySSF466893.88E-102169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-52269IPR009057Homeodomain-like
CDDcd001670.00222461No hitNo description
PROSITE profilePS5129418.803115173IPR017930Myb domain
SuperFamilySSF466894.19E-16118172IPR009057Homeodomain-like
SMARTSM007177.3E-11121171IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.3E-15122172IPR006447Myb domain, plants
PfamPF002497.5E-12124168IPR001005SANT/Myb domain
CDDcd001671.54E-10124168No hitNo description
Gene3DG3DSA:1.10.10.602.5E-12124173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDFHHHQYHS VRAAGPPAPA ARPWSKAEDK VFEGALVMWP EHAPDRWALV AAQLPGRTPR  60
EAWEHYEALV ADVDLIERGA VDVPASWDDV GGGSSSGGGG EERAPARRAG PTRPRPEKRR  120
TGIPWSEEEH RLFLRGLQEY GRGDWRNISR FAVRTRTPTQ VASHAQKYYN RQLNPASRDS  180
KRKSIHDITT P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-152096782RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG647100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794361e-154HF679436.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB30 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817656.11e-101transcription factor DIVARICATA-like
SwissprotQ8S9H79e-47DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1E5UTG31e-105A0A1E5UTG3_9POAL; Transcription factor DIVARICATA
STRINGPavir.Ea03744.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-44MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]