PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG647000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 198aa MW: 21496.2 Da PI: 8.0443 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.1 | 9.6e-42 | 6 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratks 80 lppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+v+P +Lp + ++e + w+fF++r++++a+g r++r+t s Pavir.5KG647000.1.p 6 LPPGYRFYPTEEELICFYLRNKLDSLRDDIERVIPVVDVYSVDPGQLPGihgmlcggggEGEGEGEPWFFFCPRQEREARGGRPSRTTPS 95 79****************************99****************5578888876655557779*********************** PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWka g+ v+s+ +++++g+kkt+vfy+gr p+g kt+W m+eyr+ Pavir.5KG647000.1.p 96 GYWKAAGTPGVVYSAdDRRAIGVKKTMVFYQGRVPSGAKTRWKMNEYRA 144 *************9977888***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-45 | 3 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.218 | 6 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-24 | 7 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAAAGLPPGY RFYPTEEELI CFYLRNKLDS LRDDIERVIP VVDVYSVDPG QLPGIHGMLC 60 GGGGEGEGEG EPWFFFCPRQ EREARGGRPS RTTPSGYWKA AGTPGVVYSA DDRRAIGVKK 120 TMVFYQGRVP SGAKTRWKMN EYRALQHYAA PDAGAGARAD GSSSSARAAA PPIRSPQVEE 180 RVQPVSTLHP IWNPEAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-29 | 1 | 146 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-29 | 1 | 146 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-29 | 1 | 146 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-29 | 1 | 146 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-29 | 1 | 146 | 12 | 144 | NAC domain-containing protein 19 |
4dul_B | 1e-29 | 1 | 146 | 12 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG647000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071274 | 1e-116 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818071.1 | 3e-97 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 2e-56 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2S3HPP4 | 7e-96 | A0A2S3HPP4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03745.1.p | 1e-125 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-56 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG647000.1.p |
Publications ? help Back to Top | |||
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