PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG644300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 298aa    MW: 32769 Da    PI: 7.988
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG644300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-093985347
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                          WT+ E +l+ +a ++   +   +W+++a++++ ++t  +++++++++
  Pavir.5KG644300.1.p 39 EWTAVENKLFEEALARVDRNapdRWEKVAAMLP-RKTVVDVVNHYNDL 85
                         7*****************99*************.***********986 PP
2Myb_DNA-binding47.54.2e-15145189347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G g+W+ I+r+  ++Rt+ q+ s+ qky
  Pavir.5KG644300.1.p 145 PWTEEEHKLFLMGLKKYGRGDWRNISRKYVTTRTPTQVASHAQKY 189
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.1843589IPR017884SANT domain
SMARTSM007175.6E-73688IPR001005SANT/Myb domain
SuperFamilySSF466895.89E-103893IPR009057Homeodomain-like
PfamPF002492.6E-73985IPR001005SANT/Myb domain
CDDcd001671.16E-73985No hitNo description
PROSITE profilePS5129418.021138194IPR017930Myb domain
SuperFamilySSF466891.29E-17140194IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-17141192IPR006447Myb domain, plants
SMARTSM007176.0E-13142192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-11142188IPR009057Homeodomain-like
CDDcd001671.87E-11145190No hitNo description
PfamPF002491.5E-12145189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVAEAWTQVL LPPTAPCFSG QPSCFWQDRH AGFGGRWDEW TAVENKLFEE ALARVDRNAP  60
DRWEKVAAML PRKTVVDVVN HYNDLENDVG YIEAGLVPFP HYSGSPPSSG FTLEDWGDGG  120
DGVFRRGYCL KRARGPDQER KKGVPWTEEE HKLFLMGLKK YGRGDWRNIS RKYVTTRTPT  180
QVASHAQKYF IRLNSGGKDK RRSSIHDITI VNLPDEDRGS GSPSPSPSPP SAATNPPSAD  240
QFGALVDVKP FAPPLGAARA HPYGSVKLEP KGALVAGLLG FDDLVLLQMR CAVAEQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-13401021173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.145450.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG644300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794441e-168HF679444.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB38 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815076.10.0transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H71e-74DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2T7DED30.0A0A2T7DED3_9POAL; Uncharacterized protein
STRINGPavir.Ea03421.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-79Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]