PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG644300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 32769 Da PI: 7.988 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 39 | 85 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+ E +l+ +a ++ + +W+++a++++ ++t +++++++++ Pavir.5KG644300.1.p 39 EWTAVENKLFEEALARVDRNapdRWEKVAAMLP-RKTVVDVVNHYNDL 85 7*****************99*************.***********986 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.2e-15 | 145 | 189 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r+ ++Rt+ q+ s+ qky Pavir.5KG644300.1.p 145 PWTEEEHKLFLMGLKKYGRGDWRNISRKYVTTRTPTQVASHAQKY 189 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.184 | 35 | 89 | IPR017884 | SANT domain |
SMART | SM00717 | 5.6E-7 | 36 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.89E-10 | 38 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-7 | 39 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-7 | 39 | 85 | No hit | No description |
PROSITE profile | PS51294 | 18.021 | 138 | 194 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-17 | 140 | 194 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-17 | 141 | 192 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.0E-13 | 142 | 192 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 142 | 188 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.87E-11 | 145 | 190 | No hit | No description |
Pfam | PF00249 | 1.5E-12 | 145 | 189 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MVAEAWTQVL LPPTAPCFSG QPSCFWQDRH AGFGGRWDEW TAVENKLFEE ALARVDRNAP 60 DRWEKVAAML PRKTVVDVVN HYNDLENDVG YIEAGLVPFP HYSGSPPSSG FTLEDWGDGG 120 DGVFRRGYCL KRARGPDQER KKGVPWTEEE HKLFLMGLKK YGRGDWRNIS RKYVTTRTPT 180 QVASHAQKYF IRLNSGGKDK RRSSIHDITI VNLPDEDRGS GSPSPSPSPP SAATNPPSAD 240 QFGALVDVKP FAPPLGAARA HPYGSVKLEP KGALVAGLLG FDDLVLLQMR CAVAEQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-13 | 40 | 102 | 11 | 73 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.14545 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG644300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679444 | 1e-168 | HF679444.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB38 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815076.1 | 0.0 | transcription factor DIVARICATA-like isoform X1 | ||||
Swissprot | Q8S9H7 | 1e-74 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2T7DED3 | 0.0 | A0A2T7DED3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03421.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 3e-79 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG644300.1.p |
Publications ? help Back to Top | |||
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