PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG641800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 361aa    MW: 39960.1 Da    PI: 8.0941
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG641800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.9e-1468105340
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          +k+C Ckks+Clk+YC Cfa g +Cse+C C+ C+Nk+
  Pavir.5KG641800.1.p  68 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCQPCFNKD 105
                          89**********************************97 PP
2TCR49.96.1e-16153189339
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          k+gCnCkks+ClkkYC+C+++g+ Cs  C+C+dC+N 
  Pavir.5KG641800.1.p 153 KRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCDDCQNP 189
                          78**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-1366107IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.02667191IPR005172CRC domain
PfamPF036384.6E-1069104IPR005172CRC domain
SMARTSM011141.2E-14151192IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.9E-11153188IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEATPISVKP PSPSPAAPPP AALEPRDLPT HATAATEVEP SSMNQLAVAV TPDPKRQKVE  60
ETADGNGCKH CACKKSRCLK LYCPCFAGGG YCSEKCGCQP CFNKDAYAET VQTTRKVLLS  120
RQKRMSLKIN RRSEANAEAM EDAHHSSSST PPKRGCNCKK SSCLKKYCDC YQDGTGCSLF  180
CRCDDCQNPF GKNEGIMAED SKRYLYTGAD LDHSEGEHEF VVERSPRLQS PISKESSFHQ  240
TPPHLRASSR DGHVFPQAVS QWQALPRSWH CSNKRNSNDR VMDDSANYKN SNNDWQLTKH  300
EDSYSISKCV QILNGMVELS QVEKSVAPDV FLLPGNREIF VSLGGDVRAL WLKRKIQHLT  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-126918812120Protein lin-54 homolog
5fd3_B8e-126918812120Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.440810.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG641800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810095.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A3L6T2790.0A0A3L6T279_PANMI; CRC domain-containing protein TSO1-like
STRINGPavir.Ca01393.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.11e-45Tesmin/TSO1-like CXC domain-containing protein