PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG634600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 395aa    MW: 42188 Da    PI: 5.4191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG634600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-1891136147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+W++eEd  l d+v++lG ++W++Iar ++ gR++k+c++rw + 
  Pavir.5KG634600.1.p  91 RGPWSPEEDAVLSDLVEKLGARNWTLIARGIP-GRSGKSCRLRWCNQ 136
                          89******************************.***********985 PP
2Myb_DNA-binding48.61.9e-15143187147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r+++T+eEd ++  a++ +G++ W+ Ia+ +  gRt++ +k++w++ 
  Pavir.5KG634600.1.p 143 RKPFTEEEDRIIMAAHAVHGNK-WACIAKLLD-GRTDNAIKNHWNST 187
                          789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.20886141IPR017930Myb domain
SuperFamilySSF466891.55E-3089184IPR009057Homeodomain-like
SMARTSM007175.9E-1590139IPR001005SANT/Myb domain
PfamPF002493.6E-1791136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2692144IPR009057Homeodomain-like
CDDcd001672.32E-1493135No hitNo description
SMARTSM007171.8E-13142190IPR001005SANT/Myb domain
PROSITE profilePS5129421.771142192IPR017930Myb domain
PfamPF002493.2E-13143187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-23145191IPR009057Homeodomain-like
CDDcd001672.38E-10145188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSAPETAASP APEPPSDPPA VSDAAHSNST PMAVETQTLT EPPPQPQSHQ ASPPPSGEDD  60
DVVVVSGASV GGDAAASAAS AGNATTEERV RGPWSPEEDA VLSDLVEKLG ARNWTLIARG  120
IPGRSGKSCR LRWCNQLDPQ VKRKPFTEEE DRIIMAAHAV HGNKWACIAK LLDGRTDNAI  180
KNHWNSTLRR RHCNDGGCKH GVSMERSIPE VSRAISEESW PLKDLSSFTA MDVRDAPVQT  240
VTETSPGAWL IPDQCYSTQP VDPPYLSRPV AKIGAFRPYN LGHVSEPTQQ ETPSSVFKPD  300
STLKALTPES EVFKFADPTC FAAGVPNKCG HGCSSAHKRT RTSLLGPEFN EFEDHPPILS  360
SSFASLVSEI SSIAWMRSGM QSDASSLLQS APPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40901916107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG634600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814267.10.0transcription factor MYB1-like
TrEMBLA0A2T7DED20.0A0A2T7DED2_9POAL; Uncharacterized protein
STRINGPavir.J13677.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-78myb domain protein 109