PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG630100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 357aa MW: 38486.1 Da PI: 9.7618

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG630100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.4	4.3e-15	276	329	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkeva 57 +r+rr++kNRe+A rsRqRK+a++ eLe +v++L++ N++L kk++e+l+ke Pavir.5KG630100.1.p 276 RRQRRMIKNRESAARSRQRKQAYMMELEAEVAKLKELNEELqKKQIEMLEKEKN 329 79***************************************4457999998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.4E-15	270	331	No hit	No description
SMART	SM00338	1.6E-14	272	337	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.978	274	319	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.18E-10	276	328	No hit	No description
CDD	cd14707	9.06E-24	276	328	No hit	No description
Pfam	PF00170	2.9E-13	276	330	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	279	294	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEFPRGSGRR PQQQQQPEPE HLQPMTPMPL ARQGSVYSLT FDEFQSALGG AGKDFGSMNM 60 DELLRSIWTA EETHAVAAAN ASAASAAAAD LAARAASIQR QGSLTLPRTL SQKTVDEVWR 120 DIMCFGGPSA AQAEAPPPPA QRQQTLGEIT LEEFLVRAGV VREDMTAPPP VPPLAVAAPP 180 PPPPPQPPML FPHGNVFAPL APPPLSFGNG LVSGAVGQAG GAAPSAVSPV RPVTSSGFGK 240 MEGGDLSSLS PSPVPYVFNG GLRGRKPPAM EKVVERRQRR MIKNRESAAR SRQRKQAYMM 300 ELEAEVAKLK ELNEELQKKQ IEMLEKEKNE VLERMSRQVE PTAKRICLRR TLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEFPRGSGRR PQQQQQPEPE HLQPMTPMPL ARQGSVYSLT FDEFQSALGG AGKDFGSMNM  60
DELLRSIWTA EETHAVAAAN ASAASAAAAD LAARAASIQR QGSLTLPRTL SQKTVDEVWR  120
DIMCFGGPSA AQAEAPPPPA QRQQTLGEIT LEEFLVRAGV VREDMTAPPP VPPLAVAAPP  180
PPPPPQPPML FPHGNVFAPL APPPLSFGNG LVSGAVGQAG GAAPSAVSPV RPVTSSGFGK  240
MEGGDLSSLS PSPVPYVFNG GLRGRKPPAM EKVVERRQRR MIKNRESAAR SRQRKQAYMM  300
ELEAEVAKLK ELNEELQKKQ IEMLEKEKNE VLERMSRQVE PTAKRICLRR TLTGPW*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaves. {ECO:0000269\|PubMed:18931143}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates abscisic acid (ABA) signaling (PubMed:18931143, PubMed:19947981, PubMed:27424498, PubMed:27325665). Can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway. Confers ABA-dependent drought and salinity tolerance (PubMed:18931143, PubMed:27325665). Binds specifically to the ABA-responsive elements (ABRE) in the promoter of target genes to mediate stress-responsive ABA signaling (PubMed:27325665, PubMed:27424498). {ECO:0000269\|PubMed:18931143, ECO:0000269\|PubMed:19947981, ECO:0000269\|PubMed:27325665, ECO:0000269\|PubMed:27424498}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG630100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) (PubMed:18315698, PubMed:18931143). Induced by drought, salt and osmotic stresses (PubMed:18931143). {ECO:0000269\|PubMed:18315698, ECO:0000269\|PubMed:18931143}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799480.1	0.0	bZIP transcription factor 23
Swissprot	Q6Z312	1e-161	BZP23_ORYSJ; bZIP transcription factor 23
TrEMBL	A0A2S3GTZ2	0.0	A0A2S3GTZ2_9POAL; Uncharacterized protein
STRING	Pavir.J00256.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.2	5e-40	ABRE binding factor 4

Link Out ? help Back to Top
Phytozome	Pavir.5KG630100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang Y,Tang N,Du H,Ye H,Xiong L Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiol., 2008. 148(4): p. 1938-52 [PMID:18931143] Shen J,Xie K,Xiong L Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses. Mol. Genet. Genomics, 2010. 284(6): p. 477-88 [PMID:20941508] Luo C,Guo C,Wang W,Wang L,Chen L Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice. Plant Cell Rep., 2014. 33(2): p. 323-36 [PMID:24247850] Sakuraba Y, et al. Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle. Plant Cell Physiol., 2015. 56(12): p. 2325-39 [PMID:26443376] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774] Dey A,Samanta MK,Gayen S,Sen SK,Maiti MK Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes. PLoS ONE, 2016. 11(3): p. e0150763 [PMID:26959651] Zong W, et al. Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes. Plant Physiol., 2016. 171(4): p. 2810-25 [PMID:27325665] Dey A,Samanta MK,Gayen S,Maiti MK The sucrose non-fermenting 1-related kinase 2 gene SAPK9 improves drought tolerance and grain yield in rice by modulating cellular osmotic potential, stomatal closure and stress-responsive gene expression. BMC Plant Biol., 2016. 16(1): p. 158 [PMID:27411911] Gui J, et al. OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice. Dev. Cell, 2016. 38(2): p. 201-13 [PMID:27424498]