PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG629200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 368aa    MW: 39647.3 Da    PI: 6.2441
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG629200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-1860105147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+W++eEd  l d+v++lG ++W++Iar ++ gR++k+c++rw + 
  Pavir.5KG629200.1.p  60 RGPWSPEEDAVLSDLVEKLGARNWTLIARGIP-GRSGKSCRLRWCNQ 105
                          89******************************.***********985 PP
2Myb_DNA-binding46.96.3e-15112156147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r+++T+eEd ++  a++ +G++ W+ Ia+ +  gRt++ +k++w++ 
  Pavir.5KG629200.1.p 112 RKPFTEEEDRIIMVAHAVHGNK-WACIAKLLD-GRTDNAIKNHWNST 156
                          789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.20855110IPR017930Myb domain
SuperFamilySSF466891.98E-3058153IPR009057Homeodomain-like
SMARTSM007175.9E-1559108IPR001005SANT/Myb domain
PfamPF002493.3E-1760105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2661113IPR009057Homeodomain-like
CDDcd001671.87E-1462104No hitNo description
SMARTSM007178.8E-13111159IPR001005SANT/Myb domain
PROSITE profilePS5129420.585111161IPR017930Myb domain
PfamPF002495.0E-13112156IPR001005SANT/Myb domain
CDDcd001676.79E-10114157No hitNo description
Gene3DG3DSA:1.10.10.606.9E-23114160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAVETQTLTE PPPQPQSHQA SPPPSGEDDD VVVVSGASVG GDAAASAASA GNATTEERVR  60
GPWSPEEDAV LSDLVEKLGA RNWTLIARGI PGRSGKSCRL RWCNQLDPQV KRKPFTEEED  120
RIIMVAHAVH GNKWACIAKL LDGRTDNAIK NHWNSTLRRR HCNDGRCKHG VSVERSVPEV  180
SRAVSEESWP LKDPSSFTAM DVRDAPVQTV TETSAGAWLI PVPDQCYSTQ AVDPPYLSRP  240
VAKIGAFRPY NLGHVSEPTQ QETPSSVFKP ESTLKALTPE SEVFKFADPT CFAAGVPNKC  300
GHGCSSAQKR TRKNSLLGPE FNEFEDHPPI LSSSFASLVS EISSIAWMRS GMQSSDASSL  360
LQSAPPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-40591606107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG629200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814267.10.0transcription factor MYB1-like
TrEMBLA0A2T7DED20.0A0A2T7DED2_9POAL; Uncharacterized protein
TrEMBLA0A3L6SNJ70.0A0A3L6SNJ7_PANMI; Uncharacterized protein
STRINGPavir.Ea03398.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.18e-78myb domain protein 109