PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG624600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 304aa    MW: 32374.2 Da    PI: 7.1798
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG624600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.19.4e-29182235155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++WtpeLH+rFveav++L G + A+Pk+i++lm+v+gLt+e+v+SHLQkYR+
  Pavir.5KG624600.1.p 182 KARMVWTPELHHRFVEAVAHL-GDKGAVPKAIVRLMNVEGLTRENVASHLQKYRI 235
                          68*******************.999*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.201179238IPR017930Myb domain
SuperFamilySSF466897.17E-19180239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-29181239IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24182235IPR006447Myb domain, plants
PfamPF002491.1E-9184234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MRAPCDPLRS RGLSGAAPTD HRDTVRNPSL LGRARPATAE YVMLSPRGGR PHDATAPAPA  60
PSSSSSSPRH ADGMGAGAGA SGRVIEWEAG LPEASELTPV SHPLITPVLA AAFRINIAGG  120
AFPAAAASPF DDSALAHDSP TSHLSFHCAE EEEDVEEEEG EWEAEDASSG SGACRGGKAG  180
KKARMVWTPE LHHRFVEAVA HLGDKGAVPK AIVRLMNVEG LTRENVASHL QKYRIYLKRT  240
RSTPMRQPPP PSFLTAYASP FNPHPPSDAS NQRGYCSFPS RDCEKLERDH ALQAMGWKRA  300
KDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-26182238157Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG624600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666594e-82AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence.
GenBankAP0032514e-82AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05.
GenBankAP0149574e-82AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126094e-82CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815041.11e-168transcription factor PCL1-like
TrEMBLA0A2T7DEJ31e-169A0A2T7DEJ3_9POAL; Uncharacterized protein
STRINGSi002016m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.13e-27G2-like family protein