PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG621300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 566aa    MW: 61194.6 Da    PI: 8.4722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG621300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.7e-1766112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEde l +av+ + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  Pavir.5KG621300.1.p  66 KGGWTPEEDETLRKAVETFKGRNWKKIAEFFH-DRTEVQCLHRWQKVL 112
                          688*****************************.************986 PP
2Myb_DNA-binding61.32e-19118164148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd++++d+v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Pavir.5KG621300.1.p 118 KGPWTQEEDDKIIDLVRKYGPTKWSIIAKSLP-GRIGKQCRERWHNHL 164
                          79******************************.*************97 PP
3Myb_DNA-binding55.21.6e-17170213146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WT eE+  l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
  Pavir.5KG621300.1.p 170 KDAWTLEEERALINAHRVYGNK-WAEIAKALP-GRTDNSIKNHWNS 213
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.961112IPR017930Myb domain
SMARTSM007171.1E-1465114IPR001005SANT/Myb domain
PfamPF002492.2E-1566112IPR001005SANT/Myb domain
SuperFamilySSF466896.32E-1667122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-2368124IPR009057Homeodomain-like
CDDcd001671.48E-1369112No hitNo description
PROSITE profilePS5129432.539113168IPR017930Myb domain
SuperFamilySSF466897.34E-32115211IPR009057Homeodomain-like
SMARTSM007171.8E-18117166IPR001005SANT/Myb domain
PfamPF002492.1E-18118164IPR001005SANT/Myb domain
CDDcd001671.86E-16120164No hitNo description
Gene3DG3DSA:1.10.10.601.4E-26125172IPR009057Homeodomain-like
SMARTSM007175.5E-17169217IPR001005SANT/Myb domain
PROSITE profilePS5129423.236169219IPR017930Myb domain
PfamPF002491.3E-15170213IPR001005SANT/Myb domain
CDDcd001671.07E-13172215No hitNo description
Gene3DG3DSA:1.10.10.606.5E-23173219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGAMAAEVVQ EGCVENRQPL AASSSSLSDG SSCGGGGQAG ASPPVSSSGN SISGLRRTSG  60
PIRRAKGGWT PEEDETLRKA VETFKGRNWK KIAEFFHDRT EVQCLHRWQK VLNPELIKGP  120
WTQEEDDKII DLVRKYGPTK WSIIAKSLPG RIGKQCRERW HNHLNPEIRK DAWTLEEERA  180
LINAHRVYGN KWAEIAKALP GRTDNSIKNH WNSSLRKKLD VYGANSVLAT PNLLAHDDFK  240
DQMRPVAIGS HLDLNKVPNI GSKDVPGRAH RSIMGPLLQA YNLKSIEDSG GLLSLSIPTV  300
QASYSSLVDG SAVTLAVQGL ESDSVREKGL EINSIHSKHE KCTEISSTPD PVEEGCAIQS  360
ESAPGKSGTK PSLKNELYST LGPLCYQIPN MEEVAPISSS LRSEHHGAHQ TTQHSRDGLM  420
SPDGYTSPSP TIGKVSSPLT VDSILKTAAD SFPCTPSILR KRKRDKSTPT SDNFFTANGT  480
RASTNSPESF KTASFLSLGP IDDGLLTSVR SSDASPPYQI RSKRMVALKS VEKQLDFSAD  540
GLDTSGSEIL NSPCHNSQGA NSKGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-73652195159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-73652195159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1459465RKRKRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.274640.0callus| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and spikes. {ECO:0000269|PubMed:17293435}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG621300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0653220.0BT065322.1 Zea mays full-length cDNA clone ZM_BFb0099J01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817104.10.0transcription factor MYB3R-2-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A2S3HQ480.0A0A2S3HQ48_9POAL; Uncharacterized protein
STRINGPavir.Ea03349.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-107myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]