PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG609000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 261aa MW: 27205.5 Da PI: 6.4122 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.8 | 5e-40 | 75 | 174 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C++apyf ++p++fa+vhk+FGasnv+++l ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l Pavir.5KG609000.1.p 75 PCAACKLLRRRCAQECPFAPYFSPHEPHNFAAVHKVFGASNVSRMLLEVAEGERADAASSLVYEANLRLRDPVYGCMGAISVLQQQVNAL 164 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +ael+++++e Pavir.5KG609000.1.p 165 EAELEAVRAE 174 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.906 | 74 | 175 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.9E-40 | 75 | 172 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MHQTLGGDDS ACWTSACRER LDEIGKKIKR EPDTAALALA AASTSTSTST APAADNRAPR 60 RLGLGLGGAL NTVTPCAACK LLRRRCAQEC PFAPYFSPHE PHNFAAVHKV FGASNVSRML 120 LEVAEGERAD AASSLVYEAN LRLRDPVYGC MGAISVLQQQ VNALEAELEA VRAEILKHRC 180 RQAGAGLMND ARAATASFVA PVHAGDVVSV VEAGQEVAGG GAPGMSVSSS AVYVAEAELP 240 TSTTDHYSSH NPSEHAAYFG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 75 | 184 | 11 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 75 | 184 | 11 | 120 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG609000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF057211 | 1e-164 | EF057211.1 Panicum virgatum microsatellite PVSSR075 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970407.1 | 1e-119 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 2e-68 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A1E5VHX5 | 1e-135 | A0A1E5VHX5_9POAL; LOB domain-containing protein 15 | ||||
STRING | Pavir.Ea03276.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-61 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG609000.1.p |
Publications ? help Back to Top | |||
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