PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG599000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 147aa MW: 16187.6 Da PI: 9.0836 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 39.8 | 9.1e-13 | 64 | 103 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +kk CnC++s+Clk+Y eCfa+g++C+ C+C++C+N+ e+ Pavir.5KG599000.1.p 64 KKKCCNCRNSRCLKLYWECFASGAHCDG-CNCTNCFNNPEN 103 799*************************.********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 8.0E-12 | 63 | 103 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 17.898 | 64 | 146 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.9E-9 | 65 | 100 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MRPHQVVGHV VGHVLPRHAV PVAVPVPQLR PEPVQRAPVA VPLKPESPKP RSRLYEGKDS 60 TPTKKKCCNC RNSRCLKLYW ECFASGAHCD GCNCTNCFNN PENEVARREA IDATLERNPD 120 AFRPKIGSSP HANRNNVCSA VQVLFT* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG599000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067240 | 1e-100 | BT067240.1 Zea mays full-length cDNA clone ZM_BFb0345D13 mRNA, complete cds. | |||
GenBank | HQ858671 | 1e-100 | HQ858671.1 Zea mays clone UT1107 CPP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815944.1 | 9e-74 | LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 5e-38 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2T7DGG2 | 1e-72 | A0A2T7DGG2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DGG7 | 1e-72 | A0A2T7DGG7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IK06 | 4e-73 | A0A2T8IK06_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03028.1.p | 4e-87 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4730 | 36 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 4e-29 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG599000.1.p |