PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG598500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

CPP

Protein Properties

Length: 432aa MW: 47156.4 Da PI: 8.0742

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG598500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.7	1.3e-14	58	97	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+ kks Cl+kYCeCf+a+ Cse+CkC dCkN e Pavir.5KG598500.1.p 58 KHNKGCHGKKSGCLQKYCECFQANILCSENCKCMDCKNFE 97 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	16.306	1	98	IPR005172	CRC domain
SMART	SM01114	3.5E-16	58	99	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.7E-11	61	96	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MGATAPTVLT ILRMKLPGVK LLMLHWSVIQ MHSGLRLGAA HMQIGIMRCL AISLLVGKHN 60 KGCHGKKSGC LQKYCECFQA NILCSENCKC MDCKNFEGSE ERRSLFQGDH KNSVNMLQAT 120 NAAVNGAIGT TGFSSPSTSR KRKHIDPSLD HSNKEHVAQR NGHLPQKNAV PDGSIPISQS 180 VHPPTLGPFK VTYRPLLADI VKEADIKDLC KLLVGVSGEA AKAYAGRKTQ EERDAEKEGE 240 SGGQKEDDKA GSRGLTNHDR EGNNQDPDHK ASINDNSSKG THTGKAVLEE SRPNCADDQK 300 SNRPMSPGTL ALMCDEQDTM FTTSQHAAPQ QTVADNQNQS ELYVEQERVV LTEFRDCLRK 360 LVTCGRMKEE RYSMAIKSET SGHPGQVNGV SRVPYPRVDV PAVVKTVPQG SSSHLGEWYR 420 LNDEIVCLFG S*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MGATAPTVLT ILRMKLPGVK LLMLHWSVIQ MHSGLRLGAA HMQIGIMRCL AISLLVGKHN  60
KGCHGKKSGC LQKYCECFQA NILCSENCKC MDCKNFEGSE ERRSLFQGDH KNSVNMLQAT  120
NAAVNGAIGT TGFSSPSTSR KRKHIDPSLD HSNKEHVAQR NGHLPQKNAV PDGSIPISQS  180
VHPPTLGPFK VTYRPLLADI VKEADIKDLC KLLVGVSGEA AKAYAGRKTQ EERDAEKEGE  240
SGGQKEDDKA GSRGLTNHDR EGNNQDPDHK ASINDNSSKG THTGKAVLEE SRPNCADDQK  300
SNRPMSPGTL ALMCDEQDTM FTTSQHAAPQ QTVADNQNQS ELYVEQERVV LTEFRDCLRK  360
LVTCGRMKEE RYSMAIKSET SGHPGQVNGV SRVPYPRVDV PAVVKTVPQG SSSHLGEWYR  420
LNDEIVCLFG S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-12	58	105	83	130	Protein lin-54 homolog
5fd3_B	1e-12	58	105	83	130	Protein lin-54 homolog
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.15288	0.0	callus\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG598500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815944.1	0.0	LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
TrEMBL	A0A2T8IK13	0.0	A0A2T8IK13_9POAL; Uncharacterized protein
STRING	Pavir.Ea02785.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4730	36	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	9e-77	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG598500.1.p