PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG598200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 553aa MW: 59564.3 Da PI: 4.8409 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l Pavir.5KG598200.1.p 43 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 90 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.9e-17 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++ Pavir.5KG598200.1.p 96 KGAFTPEEERLIIQLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 139 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF001693 | 2.3E-252 | 1 | 552 | IPR016310 | Transcription factor, GAMYB |
PROSITE profile | PS51294 | 16.625 | 38 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 40 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 42 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 43 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 44 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.68E-11 | 45 | 90 | No hit | No description |
PROSITE profile | PS51294 | 25.656 | 91 | 145 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-17 | 95 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 96 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 98 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.04E-13 | 98 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MYRVKSESDC EMMLQDQMDS PVADDGSSGG GSPHRGSGPP LKKGPWTSAE DAILVDYVKK 60 HGEGNWNAVQ KNTGLFRCGK SCRLRWANHL RPNLKKGAFT PEEERLIIQL HAKMGNKWAR 120 MAAHLPGRTD NEIKNYWNTR IKRCQRAGLP IYPASVCNQS SSEDQQISGD FNCGENISND 180 LLSGNSLYLP DFTSDNFIAN TEALSYAPQL SAASISNLLG QSFASKNCSF MDQVDQSGML 240 KQSGCVLPAL SDTVDGVLSS VDQFSKDSEK LKQALGFDYL NEANASSKTI APFGVTLSGS 300 HAFLNGIFSS SRPINGPLKM ELPSLQDTES DPNSWLKYTL APAMQPTELV DPYLHSPMAT 360 PSAKSESASP RNSGLLEELL HEAQALRSGK NQLPSVRSSS SSAGTPCETT TVVSPEFDLC 420 QEYWDEHHSS FLNECAPFSG YSFTESTPVS AASPDIFQLS KISPAQSPSM GSGEQAVEPK 480 HDAAGSPHPE NLRPDALFSG NTADPCSFND AIAMLLGNDM NAESKPVVGD GIVFGSSSWG 540 NMPQACEISE FK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-32 | 39 | 143 | 3 | 106 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.22992 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG598200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033925 | 0.0 | BT033925.1 Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds. | |||
GenBank | BT062692 | 0.0 | BT062692.1 Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds. | |||
GenBank | BT063828 | 0.0 | BT063828.1 Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds. | |||
GenBank | HQ858750 | 0.0 | HQ858750.1 Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819835.1 | 0.0 | transcription factor GAMYB-like | ||||
Swissprot | A2WW87 | 0.0 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | A0A2S3HQQ9 | 0.0 | A0A2S3HQQ9_9POAL; Transcription factor | ||||
TrEMBL | A0A2T7DFC7 | 0.0 | A0A2T7DFC7_9POAL; Transcription factor | ||||
STRING | Pavir.Ea03206.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3947 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-85 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG598200.1.p |