PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG595400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 470aa    MW: 51262.4 Da    PI: 6.4364
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG595400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.38e-09184224545
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k  rr+++NReAAr+sR+RKk +i++Le    +L++  ++L
  Pavir.5KG595400.1.p 184 KTLRRLAQNREAARKSRLRKKVYIQNLESSRLKLTQLEQEL 224
                          7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-7174227No hitNo description
SMARTSM003388.8E-8180243IPR004827Basic-leucine zipper domain
PfamPF077165.2E-6181226IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.105182226IPR004827Basic-leucine zipper domain
CDDcd147085.38E-22184236No hitNo description
SuperFamilySSF579594.5E-7184227No hitNo description
PROSITE patternPS000360187202IPR004827Basic-leucine zipper domain
PfamPF141448.4E-32266341IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MESRQGGSAA AAAEDAGRAI PSFGPPQHSI HADMTSMQPS RVTDFGALAQ SAGFRIEDLA  60
NLNTSTLFNL KPNIHTINNN PLQFGSYGKP ISPSHINTTT AATAAARIDP QSLEQQTGAQ  120
QNLVALPTGN TENWGESAMA DSPMTDTSTD PDTDERNQMF EQGLVAGPTA SDSSDKSRDK  180
LDQKTLRRLA QNREAARKSR LRKKVYIQNL ESSRLKLTQL EQELQRARQQ GIFISTSVDQ  240
PQSANANGAL AFDMEYARWL EEHNKHVNEL RAALNAHAGD NDLRGIVDSI MAHYDEIFRF  300
KGVAAKADVF HVLSGMWKTP AESCFMWLGG FRSSELLKLL AGQLEPLTDQ QLVGISNLQQ  360
SSQQAEDALS QGMEALQQSL AETLASGSLG PAGSSGNVAN YMGQMAMAMG KLGTLENFLR  420
QADNLRLQTL QQMQRILTTR QSARALLAIS DYFSRLRALS SLWLARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.86490.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG595400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX691520.0X69152.1 Z.mays OBF3.2 mRNA for ocs-element binding factor 3.2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816950.10.0transcription factor TGAL1 isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2S3HR670.0A0A2S3HR67_9POAL; Uncharacterized protein
TrEMBLA0A2T7DFG00.0A0A2T7DFG0_9POAL; Uncharacterized protein
STRINGPavir.Ea03193.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-136bZIP family protein