PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG592200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 254aa MW: 27674.1 Da PI: 9.9804 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.8 | 6e-15 | 58 | 97 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+ kks Cl+kYCeCf+a+ Cse+CkC dCkN e Pavir.5KG592200.1.p 58 KHNKGCHGKKSGCLQKYCECFQANILCSENCKCMDCKNFE 97 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 16.306 | 1 | 98 | IPR005172 | CRC domain |
SMART | SM01114 | 3.5E-16 | 58 | 99 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-11 | 61 | 96 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGATAPTVLT ILRMKLPGVK LLMLHWSVIQ MHSGLRLGAA HMQIGIMRCL AISLLVGKHN 60 KGCHGKKSGC LQKYCECFQA NILCSENCKC MDCKNFEGSE ERRSLFQGDH KNSVNMQQAT 120 NAAVNGAIGT TGFSSPSTSR KRKHIDPSLD HSNKEHVAQR NGHLPQKNAV PDGSIPISQS 180 VHPPTLGPFK VTYRPLLADI VKEADIKDLC KLLVGVSGEA AKAYAGRKTQ EERDAEKVKV 240 GDRRKMIRQV PEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-13 | 58 | 105 | 83 | 130 | Protein lin-54 homolog |
5fd3_B | 4e-13 | 58 | 105 | 83 | 130 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG592200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815944.1 | 1e-121 | LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 3e-51 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2T8IK13 | 1e-120 | A0A2T8IK13_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03028.1.p | 1e-131 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4730 | 36 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-53 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG592200.1.p |