PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG592000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 553aa    MW: 59546.2 Da    PI: 4.8409
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG592000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-164390148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
  Pavir.5KG592000.1.p 43 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 90
                         79******************************************9986 PP
2Myb_DNA-binding52.79.9e-1796139146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  Pavir.5KG592000.1.p  96 KGAFTPEEERLIIQLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 139
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0016932.4E-2521552IPR016310Transcription factor, GAMYB
PROSITE profilePS5129416.6253890IPR017930Myb domain
SuperFamilySSF466894.87E-3140137IPR009057Homeodomain-like
SMARTSM007172.1E-144292IPR001005SANT/Myb domain
PfamPF002491.1E-144390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-234497IPR009057Homeodomain-like
CDDcd001672.68E-114590No hitNo description
PROSITE profilePS5129425.65691145IPR017930Myb domain
SMARTSM007172.1E-1795143IPR001005SANT/Myb domain
PfamPF002496.9E-1696139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2698143IPR009057Homeodomain-like
CDDcd001677.04E-1398139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MYRVKSESDC EMMLQDQMDS PVADDGSSGG GSPHRGSGPP LKKGPWTSAE DAILVDYVKK  60
HGEGNWNAVQ KNTGLFRCGK SCRLRWANHL RPNLKKGAFT PEEERLIIQL HAKMGNKWAR  120
MAAHLPGRTD NEIKNYWNTR IKRCQRAGLP IYPASVCNQS SSEDQQISGD FNCGENISND  180
LLSGNSLYLP DFTSDNFIAN TEALSYAPQL SAASISNLLG QSFASKNCSF MDQVDQSGML  240
KQSGCVLPAL SDTVDGVLSS VDQFSKDSEK LKQALGFDYL NEANASSKTI APFGVTLSGS  300
HAFLNGIFSS SRPINGPLKM ELPSLQDTES DPNSWLKYTL APAMQPTELV DPYLHSPIAT  360
PSAKSESASP RNSGLLEELL HEAQALRSGK NQLPSVRSSS SSAGTPCETT TVVSPEFDLC  420
QEYWDEHHSS FLNECAPFSG YSFTESTPVS AASPDIFQLS KISPAQSPSM GSGEQAVEPK  480
HDAAGSPHPE NLRPDALFSG NTADPCSFND AIAMLLGNDM NAESKPVVGD GIVFGSSSWG  540
NMPQACEISE FK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32391433106B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.229920.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG592000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0339250.0BT033925.1 Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds.
GenBankBT0626920.0BT062692.1 Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds.
GenBankBT0638280.0BT063828.1 Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds.
GenBankHQ8587500.0HQ858750.1 Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819835.10.0transcription factor GAMYB-like
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A2S3HQQ90.0A0A2S3HQQ9_9POAL; Transcription factor
TrEMBLA0A2T7DFC70.0A0A2T7DFC7_9POAL; Transcription factor
STRINGPavir.Ea03206.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-85myb domain protein 33