PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG576800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 387aa MW: 40644.3 Da PI: 6.3439 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 1e-05 | 275 | 312 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Pavir.5KG576800.1.p 275 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 312 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.731 | 263 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-11 | 273 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.54E-5 | 273 | 317 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-8 | 277 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MADEWWSSTA HRSHGASACS AAPLAVVTDR VACGWATSPT AATAESTSSI TFQDPYRSST 60 HQPLSDAASS LGDPHADWTQ AFLSGRSDTG FQAVLQDDMV RAQPAGDEAS AMNNPLIGDM 120 SGGFLVDQAQ LAPPLPYGTA APPHQALFDG TAGHNISMYG DSQSTVSYDG PASMQFSQLL 180 KPSAPASGPM QGAAAAAMQY LSGSYLPFGG PLQSQLLLQA LQTKPSSRSS NANPLTDTVK 240 DACSPAARKS APESPAAAKR PRIEAPSPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS 300 VLHEAIEYIK FLHGQVSSLS SPYLKNGIPL QQHLQQKGSE DAKDSGDTKQ DLRSRGLCLV 360 PVASTYTVAA EAVPEFWHPT FGGTFR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15405 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG576800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969801 | 1e-152 | EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817273.1 | 0.0 | transcription factor bHLH110-like isoform X2 | ||||
TrEMBL | A0A2T7DFU2 | 0.0 | A0A2T7DFU2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03112.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 2e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG576800.1.p |