PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG569200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 360aa    MW: 39071.4 Da    PI: 10.3862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG569200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-10118166455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h +rEr RR+r+ ++f+ L  llP+     s K  K +i+  Av YI++L+
  Pavir.5KG569200.1.p 118 RHIMRERLRRERLSQGFADLHALLPPG---ASSKGGKNDIVGAAVGYIRELE 166
                          599***********************7...69*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-10112186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-14113185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.414114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-8118166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-6120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MADPFFYLGQ DGADEDYLMS LGLVLPPEPP AGSAFEAYQR RPTLLESRLM MMGRERGRHS  60
NSGGGENVHR RMFGYYLRRI ARRDDAAAGA AHSAPADDEA AVVPPPPPPP PRSSSRFRHI  120
MRERLRRERL SQGFADLHAL LPPGASSKGG KNDIVGAAVG YIRELEGRRG WLRARNQELL  180
ERAASSRARS SGAGAARNAA GGDMVVKVRA ESEDRAAAVD AFETVLRRLK AMGALRVTAI  240
RSCFCTGGMW MNVGVEGQGA FCKCPPSGEM AGRELAAWPV TSAEQELPER RISRISFPKQ  300
TIPASISSSS RDCGGVKAGA DESRARVTLA WGKEGVQKPK RDGGIRRSEL FEMLMHISW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG569200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9488631e-58EU948863.1 Zea mays clone 388069 mRNA sequence.
GenBankKJ7280301e-58KJ728030.1 Zea mays clone pUT6169 bHLH transcription factor (bHLH79) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818224.11e-113transcription factor BHLH148-like
TrEMBLA0A2S3HR711e-112A0A2S3HR71_9POAL; Uncharacterized protein
STRINGPavir.Ea03059.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432