PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG556600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 279aa MW: 29618.1 Da PI: 8.8469 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94 | 2.9e-29 | 47 | 114 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ Pavir.5KG556600.1.p 47 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQ 114 78*************************************************************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.6E-27 | 48 | 108 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.951 | 48 | 106 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MIRSSNLQQA AAAADEELAR KNAAVATSRQ WSAQTESRIV RVSRVFGGKD RHSKVKTVKG 60 LRDRRVRLSV PTAIQLYDLQ DRLGLNQPSK VVDWLLNAAR HEIDKLPPLQ FPPQDLMVGH 120 LAPPMPLAHE EKFAHIAAAA ALTSDGAKPG QQGDVDMDGS GAGGGHHLGR FPGGYHRFMG 180 LNNAFGMVSG AMAPYNSYTG EAWNNSSSVH DGGGGGSQQV AAAAAAHHSP FPSLLSLAPA 240 PHQLVFYSSE ADQQFQVDNL GSQSLSLSSA RAYHDQAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 53 | 107 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 53 | 107 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.24971 | 0.0 | root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG556600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970217 | 0.0 | EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814168.1 | 1e-155 | transcription factor PCF5-like | ||||
Refseq | XP_025814169.1 | 1e-155 | transcription factor PCF5-like | ||||
TrEMBL | A0A3L6SMS6 | 1e-160 | A0A3L6SMS6_PANMI; Transcription factor PCF5-like | ||||
STRING | Pavir.Ea02793.1.p | 1e-171 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 5e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG556600.1.p |