PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG554900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 605aa    MW: 65508 Da    PI: 8.7141
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG554900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR40.74.7e-13153192242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  Pavir.5KG554900.1.p 153 KKKCCNCRNSRCLKLYCECFASGAHCDG-CNCTNCFNNPEN 192
                          799*************************.********9875 PP
2TCR50.93.2e-16236275140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Pavir.5KG554900.1.p 236 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 275
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-13152192IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.385153276IPR005172CRC domain
PfamPF036383.1E-9154189IPR005172CRC domain
SMARTSM011148.4E-20236277IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12239274IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MAGKEQGGGG PPPRPPVPAA STQPPIKKLV RQLDFNTAVL AGNPAMAAAA AAVSRALQPR  60
TLPVGLQHPP QQARAAVPMG VPQQLHPRLL PVMRPHQVAG HVPLPRHAVP VAVPVPQLRP  120
EPVQRAPVAV PLKPESPKPR SRLYEGKDST PTKKKCCNCR NSRCLKLYCE CFASGAHCDG  180
CNCTNCFNNP ENEVARREAI DATLERNPDA FRPKIGSSPH ANRNNEVSSD LPLVGKHNKG  240
CHCKKSGCLK KYCECFQANI LCSENCKCMD CKNFEGSEER RSLFQGDHKN SVNMQQATNV  300
AVNGAIGATG FSSPSTSRKR KHIDPSLDHS NKEHVAQRNL PQKNALPNGS IPISQSVHPP  360
TLGPFKVSYR PLLADIVKEA DIKDLCKLLV GVSGEASKAY AGRKTQEERD AEKEGESGGQ  420
KEDDKAGSRG LTNHDREGNN QDLDHKASIN DNSSEGTHTG KAVLEESRPN CADDQKSNRP  480
MSPGTLALMC DEQDTMFTTS QHAAPQQTVA DNQNQSELYV EQERVVLTEF RDCLRKLVTC  540
GRMKEERYSM AIKSETSGHP GQVNGVSRVP YPRVDVPAVV KTFPQGSSSH PVAGKPVTGH  600
LDKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-2915728514132Protein lin-54 homolog
5fd3_B5e-2915728514132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.152880.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG554900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815944.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T8IK130.0A0A2T8IK13_9POAL; Uncharacterized protein
STRINGPavir.Ea02785.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-115Tesmin/TSO1-like CXC domain-containing protein