PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG553400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 605aa MW: 65484.1 Da PI: 8.7137 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 40.7 | 4.7e-13 | 153 | 192 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +kk CnC++s+Clk+YCeCfa+g++C+ C+C++C+N+ e+ Pavir.5KG553400.1.p 153 KKKCCNCRNSRCLKLYCECFASGAHCDG-CNCTNCFNNPEN 192 799*************************.********9875 PP | |||||||
2 | TCR | 50.9 | 3.2e-16 | 236 | 275 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Pavir.5KG553400.1.p 236 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 275 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.7E-13 | 152 | 192 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.385 | 153 | 276 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.1E-9 | 154 | 189 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 236 | 277 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 239 | 274 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MAGKEQGGGG PPPRPPVPAA STQPPIKKLV RQLDFNTAVL AGNPAMAAAA AAVSRALQPR 60 TLPVGLQHPP QQARAAVPMG VPQQLHPRLL PVMRPHQVAG HVPLPRHAVP VAVPVPQLRP 120 EPVQRAPVAV PLKPESPKPR SRLYEGKDST PTKKKCCNCR NSRCLKLYCE CFASGAHCDG 180 CNCTNCFNNP ENEVARREAI DATLERNPDA FRPKIGSSPH ANRNNEVSSD LPLVGKHNKG 240 CHCKKSGCLK KYCECFQANI LCSENCKCMD CKNFEGSEER RSLFQGDHKN SVNMQQATNV 300 AVNGAIGATG FSSPSTSRKR KHIDPSLDHS NKEHVAQRNL PQKNALPNGS IPISQSVHPP 360 TLGPFKVSYR PLLADIVKEA DIKDLCKLLV GVSGEASKAY AGRKTQEERD AEKEGESGGQ 420 KEDDKAGSRG LTNHDREGNN QDLDHKASIN DNSSEGTHTG KAVLEESRPN CADDQKSNRP 480 MSPGTLALMC DEQDTMFTTS QHAAPQQTVA DNQNQSELYV EQERVVLTEF RDCLRKLVTC 540 GRMKEERYSM AIKSETSGLP GQVNGVSRVP YPRVDVPAVV KTFPQGSSSH PVAGKPVTGH 600 LDKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-29 | 157 | 285 | 14 | 132 | Protein lin-54 homolog |
5fd3_B | 5e-29 | 157 | 285 | 14 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15288 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG553400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815944.1 | 0.0 | LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2T8IK13 | 0.0 | A0A2T8IK13_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02785.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4730 | 36 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-116 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG553400.1.p |