PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5KG553000.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 578aa MW: 62763.4 Da PI: 10.2141 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.1 | 2.6e-17 | 1 | 42 | 15 | 56 |
HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +e++F+++++p++++r++L+++lgL+ rqVk+WFqNrR++ k Pavir.5KG553000.4.p 1 MEAVFKESPHPDEKQRQQLSQELGLSARQVKFWFQNRRTQIK 42 799***********************************9877 PP | |||||||
2 | START | 171.4 | 5.9e-54 | 154 | 377 | 9 | 206 |
HHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 9 elvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 el ++ +a+ep+Wv+s + +n+de+ ++f++++ s+ea+r++gvv+ ++++lv+ ++d + qW e ++ ka Pavir.5KG553000.4.p 154 ELTAMCSAGEPLWVRSLetgrDVLNYDEYARRFQRGGDdpagggeqragWSVEASRETGVVFLDTTQLVNAFMDAN-QWMELFPtmisKA 242 788999***************************88777**************************************.99999999999** PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksngh 161 +tl+vi+ g g++qlm+ae q l+plvp R+ f+R++++l+a++w++vdvSvd+ ++ ss ++ + pSg++ie+ ng+ Pavir.5KG553000.4.p 243 ATLAVIRAGqnddkdGVVQLMFAEVQTLTPLVPtRELSFLRHCKKLTADKWAVVDVSVDNVEPDARtSSTASKCLKKPSGCVIEEQTNGR 332 *************************************************************9999889999******************* PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +kvtwveh+ ++ + ++++ r+ sgl +ga++wva+l+ qce+ Pavir.5KG553000.4.p 333 CKVTWVEHATCRNAAVPSMCRPAAASGLTFGARRWVAALRLQCER 377 *******************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.374 | 1 | 44 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.9E-15 | 1 | 42 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-15 | 1 | 51 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.06E-13 | 1 | 45 | No hit | No description |
SMART | SM00389 | 3.3E-7 | 1 | 48 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.68E-14 | 1 | 48 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.6E-5 | 15 | 24 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 19 | 42 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.6E-5 | 24 | 40 | IPR000047 | Helix-turn-helix motif |
SMART | SM00234 | 6.1E-37 | 147 | 377 | IPR002913 | START domain |
PROSITE profile | PS50848 | 34.356 | 152 | 380 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.79E-25 | 153 | 377 | No hit | No description |
CDD | cd08875 | 3.65E-89 | 154 | 376 | No hit | No description |
Pfam | PF01852 | 5.3E-43 | 154 | 377 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.0E-5 | 200 | 346 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.04E-7 | 399 | 488 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 578 aa Download sequence Send to blast |
MEAVFKESPH PDEKQRQQLS QELGLSARQV KFWFQNRRTQ IKATQERHEN ALLKSELEKL 60 QGENRAMREL AKKSPRCPGC GAAAAASTEE QQLRLENAML KAEVERLRGT LGTPAADELA 120 VAAPASPSRS ARAIRIGCGG GGGLSGHDRT RILELTAMCS AGEPLWVRSL ETGRDVLNYD 180 EYARRFQRGG DDPAGGGEQR AGWSVEASRE TGVVFLDTTQ LVNAFMDANQ WMELFPTMIS 240 KAATLAVIRA GQNDDKDGVV QLMFAEVQTL TPLVPTRELS FLRHCKKLTA DKWAVVDVSV 300 DNVEPDARTS STASKCLKKP SGCVIEEQTN GRCKVTWVEH ATCRNAAVPS MCRPAAASGL 360 TFGARRWVAA LRLQCERMVF SVATNIPARD SAGVATLAGR RSVLKLAHRM ASSLCRVIGG 420 SRGLAWSGQA SNSGGVRVTS RRNAGDDPGE PCGLVACAVL SAWLPVNPAA LLDFLRDASR 480 RHEWDVMLPP GRPVRSRVSV AKGKDRGNCV TAYVDLISSL TERSRPIMSH HQSHCRSLSD 540 VRPRESRTAS GSSRTAAPAP ASRPWRTRRS TPRPCGR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5KG553000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | PNIAATA | 6e-86 | D25322.1 Panicum miliaceum gene for cytosolic aspartate aminotransferase, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818635.1 | 0.0 | homeobox-leucine zipper protein ROC9-like | ||||
Swissprot | Q5JMF3 | 0.0 | ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9 | ||||
TrEMBL | A0A2T7DGH1 | 0.0 | A0A2T7DGH1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02783.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79840.1 | 1e-170 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5KG553000.4.p |