PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG544700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 417aa    MW: 44334.6 Da    PI: 6.8784
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG544700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.21.5e-34107218189
                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssas 83 
                          aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak ai+el++    ++ ++       e+++++    
  Pavir.5KG544700.1.p 107 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKSAIDELPDRAEAPPPATeaadaaaEPAEQVT--- 193
                          689**************************************************************4444433311221122222222... PP

                  TCP  84 nsssg.......................k 89 
                              +                       +
  Pavir.5KG544700.1.p 194 ----TtsygfgnpisgvagsfvphsvggD 218
                          ....1222344455555555555555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-31109213IPR005333Transcription factor, TCP
PROSITE profilePS5136932.909110168IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MASRLKLEED KNQLSKGLDP WSNNNPTTAT TSTLHYLLQE KERAQAQEQL QIYHQQGFGY  60
LQHHRRQQQQ QQQSRAGAGG DGVSSGESTP VDALATAFGS GRIVRSAAGR KDRHSKVCTA  120
RGLRDRRVRL AAHTAIRFYD VQDRLGYDRP SKAVDWLIRN AKSAIDELPD RAEAPPPATE  180
AADAAAEPAE QVTTTSYGFG NPISGVAGSF VPHSVGGDGV SGSVKSLFPS SSTASTTPAH  240
EEYRGSPPDL LSRTTSSQPQ ELCLTLQSNQ HQIFSHVPHQ NHQAGMISGA GVPGWPEHGQ  300
RMPSWHASES SAGDGRGAGN GDGGYMFGVQ ARQGLDHQSQ LFSQGEPLQS SGGWASSART  360
WLDPLAAIHQ PSAMAAGQVG FSHLVGAGGG FMGFLAPAAS QRLQGEEEQG SEAMRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20115169155Putative transcription factor PCF6
5zkt_B2e-20115169155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.78670.0callus
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG544700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721190.0EU972119.1 Zea mays clone 375445 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815346.10.0transcription factor PCF7-like
SwissprotQ8LT051e-166PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A2T8IK720.0A0A2T8IK72_9POAL; Uncharacterized protein
STRINGPavir.J07136.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-32TCP family protein