PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG544700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 417aa MW: 44334.6 Da PI: 6.8784 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.2 | 1.5e-34 | 107 | 218 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssas 83 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak ai+el++ ++ ++ e+++++ Pavir.5KG544700.1.p 107 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKSAIDELPDRAEAPPPATeaadaaaEPAEQVT--- 193 689**************************************************************4444433311221122222222... PP TCP 84 nsssg.......................k 89 + + Pavir.5KG544700.1.p 194 ----TtsygfgnpisgvagsfvphsvggD 218 ....1222344455555555555555552 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-31 | 109 | 213 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.909 | 110 | 168 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MASRLKLEED KNQLSKGLDP WSNNNPTTAT TSTLHYLLQE KERAQAQEQL QIYHQQGFGY 60 LQHHRRQQQQ QQQSRAGAGG DGVSSGESTP VDALATAFGS GRIVRSAAGR KDRHSKVCTA 120 RGLRDRRVRL AAHTAIRFYD VQDRLGYDRP SKAVDWLIRN AKSAIDELPD RAEAPPPATE 180 AADAAAEPAE QVTTTSYGFG NPISGVAGSF VPHSVGGDGV SGSVKSLFPS SSTASTTPAH 240 EEYRGSPPDL LSRTTSSQPQ ELCLTLQSNQ HQIFSHVPHQ NHQAGMISGA GVPGWPEHGQ 300 RMPSWHASES SAGDGRGAGN GDGGYMFGVQ ARQGLDHQSQ LFSQGEPLQS SGGWASSART 360 WLDPLAAIHQ PSAMAAGQVG FSHLVGAGGG FMGFLAPAAS QRLQGEEEQG SEAMRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 115 | 169 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 115 | 169 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7867 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG544700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972119 | 0.0 | EU972119.1 Zea mays clone 375445 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815346.1 | 0.0 | transcription factor PCF7-like | ||||
Swissprot | Q8LT05 | 1e-166 | PCF7_ORYSJ; Transcription factor PCF7 | ||||
TrEMBL | A0A2T8IK72 | 0.0 | A0A2T8IK72_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07136.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12056 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 7e-32 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG544700.1.p |