PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG511400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 408aa    MW: 42214.4 Da    PI: 8.7768
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG511400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13335380655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Pavir.5KG511400.1.p 335 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 380
                          689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15332391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.55E-13333384No hitNo description
Gene3DG3DSA:4.10.280.103.8E-15334388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-10335380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MYGSPVPKDL NLPAAQQPQP TTTRTPPQMS SPGLLRYRSA PSTLLGEVMC GDHDFPGAAA  60
GAAGHGPEHA AADNVLARFL AGHHAEIPDC KPPRPAAAAH FMEDAASVAA SQQQQLMYPS  120
QQQMAAMEGL YRNVSSGGAE QAVAAGASGG AVLRQSSSPA GFLNHLSMDN GYGSMLRAGM  180
AVGGFRNGVV GDARLKGQLS FPSRQGSVMS QISEVSSEEL DGGGSPEAAG SNGAARGYGG  240
IPGYPMGGGS SGAWADEQSP TSSGAKRPRD SGPAPQNGQQ QQPLAPQLSL PGGGGNGVGK  300
QPSAEMAAID KFLQFQDAVP CKIRAKRGCA THPRSIAERV RRTKISERIR KLQELVPNME  360
KQTNTADMLD LAVDYIKDLQ KKVKVLNDGR ASCTCSAGKL LQNQFGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG511400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699620.0EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803424.10.0transcription factor bHLH130-like
RefseqXP_025803426.10.0transcription factor bHLH130-like
TrEMBLA0A2S3H1710.0A0A2S3H171_9POAL; Uncharacterized protein
STRINGPavir.J00377.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-50bHLH family protein