PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG504000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 21157 Da PI: 8.0571 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.5 | 6.4e-45 | 17 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql Pavir.5KG504000.1.p 17 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQL 106 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +++lal+k+e Pavir.5KG504000.1.p 107 QVQLALAKAE 116 ******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.842 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-44 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MAGSGSSSSS SSSSSSPCAS CKLLRRRCTQ ECVFAPYFPP EDPHKFAIVH KVFGASNVSK 60 MLQELPAQQR ADAVSSLVYE ANARMRDPVY GCVGAISYLQ QQVSQLQVQL ALAKAEILCV 120 HATASSSPSS PSQQRQQQIM ESEAYVSSLL MQNTLMNSSS AAHHQQQMLG SSLGSSGSTA 180 TAAMMLQEAC LKKESLWA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-50 | 7 | 118 | 1 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-50 | 7 | 118 | 1 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG504000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100852 | 1e-105 | FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661028.1 | 4e-96 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 4e-68 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A368S2P5 | 9e-95 | A0A368S2P5_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J13923.1.p | 1e-134 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-55 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG504000.1.p |
Publications ? help Back to Top | |||
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