PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG495500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 307aa    MW: 33057.6 Da    PI: 6.505
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG495500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-152067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l+  + ++G g+W+++++  g+ R++k+c++rw +yl
  Pavir.5KG495500.1.p 20 KGLWSPEEDDKLYSHIIRYGVGCWSSVPKLAGLQRCGKSCRLRWINYL 67
                         678*******************************************97 PP
2Myb_DNA-binding44.43.9e-1473117147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++++ E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 
  Pavir.5KG495500.1.p  73 RGSFSQLEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 117
                          899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.151567IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-221670IPR009057Homeodomain-like
SuperFamilySSF466891.05E-2718114IPR009057Homeodomain-like
SMARTSM007179.4E-121969IPR001005SANT/Myb domain
PfamPF002495.7E-142067IPR001005SANT/Myb domain
CDDcd001672.09E-102367No hitNo description
PROSITE profilePS5129423.12268122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2471122IPR009057Homeodomain-like
SMARTSM007171.7E-1372120IPR001005SANT/Myb domain
PfamPF002491.8E-1273117IPR001005SANT/Myb domain
CDDcd001675.05E-975115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRHAHAGSA AAGVQHKLRK GLWSPEEDDK LYSHIIRYGV GCWSSVPKLA GLQRCGKSCR  60
LRWINYLRPD LKRGSFSQLE EDAIVGLHEI LGNRWSQIAS HLPGRTDNEI KNFWNSCLKK  120
KLRQRGIDPT THKPISADAA AAAAATLDQP ASQEHKPPAA AADAGGFAPK QQQQHQQVFD  180
PFPLTDSFGG GFDAAGGPAL YGHLGGGGKQ DAAAFVDYSS VLDVSENLGY GESSSNSSNW  240
NCAPEASNAL DGSEAAAQLH WASGEEQSLE HKFLLPCHGQ QEQSLPHFDF DISRGAVVGD  300
FNLEFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27181225108B-MYB
1h8a_C4e-271812225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123LKKKLRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.143740.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG495500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814550.11e-169myb-related protein Hv33-like
SwissprotP200271e-104MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A2T7DHX11e-180A0A2T7DHX1_9POAL; Uncharacterized protein
STRINGSi005548m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.18e-71myb domain protein 86